Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_A17
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MA... 37 0.045
sp|Q08864|H11_VOLCA Histone H1-I 35 0.29
sp|P29548|TEBB_STYMY Telomere-binding protein beta subunit 32 1.5
sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP ... 32 1.5
sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MA... 32 1.9
sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MA... 32 1.9
sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89... 32 2.5
sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 (RNA-binding m... 31 3.2
sp|P41697|BUD6_YEAST Bud site selection protein BUD6 (Actin... 30 5.5
sp|P04769|PLFR_MOUSE Proliferin-related protein precursor (... 30 7.2
>sp|P78559|MAP1A_HUMAN Microtubule-associated protein 1A (MAP 1A) (Proliferation-related
protein p80) [Contains: MAP1 light chain LC2]
Length = 2805
Score = 37.4 bits (85), Expect = 0.045
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Frame = +3
Query: 240 KDITD-ALAKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEK 416
KD+ A+ + K +K+ + +++ L+ +K +K+ E V EG+K + L E
Sbjct: 297 KDLASGAVPTNLKPSKIKQRADSKESLKATTKTAVSKLAKREEVVEEGAKEARSELAKEL 356
Query: 417 SNLVHDAAEIPEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMID 596
+ A E E ++ A+PE+++ + +E +KA ++ + K
Sbjct: 357 AKTEKKAKESSEKPPEKPAKPERVKTESSE-ALKAEKRK-----------LIKDKVGKKH 404
Query: 597 GTESANKVEKKVETPKKSISAVKTPEKK 680
E +K+E+K + KK I + KK
Sbjct: 405 LKEKISKLEEKKDKEKKEIKKERKELKK 432
>sp|Q08864|H11_VOLCA Histone H1-I
Length = 261
Score = 34.7 bits (78), Expect = 0.29
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 1/173 (0%)
Frame = +3
Query: 165 YVCRKIYNDINKVNFSKLIAQTFEDKDITDALAKHYKSAKVTKYMNTQYGLEFPSKEEAN 344
++ K DI+ NF+K ++Q + L K S K+++ + + P K +A+
Sbjct: 87 FIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKAKKSTPKKAKAD 146
Query: 345 KIFNEETVTIEGSKM-VLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAKKAEKTVKA 521
+ + K + A K + E E K+ A P+ + KKA A
Sbjct: 147 GEAKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEKKKATPKAEKPKKAATPKSA 206
Query: 522 GVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVETPKKSISAVKTPEKK 680
G K++ K K + + + K TP K + K P KK
Sbjct: 207 GKKKAT------------PKPKAAPKSPAKKDAKPKKATPSKKAAPKKAPAKK 247
>sp|P29548|TEBB_STYMY Telomere-binding protein beta subunit
Length = 392
Score = 32.3 bits (72), Expect = 1.5
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 1/104 (0%)
Frame = +3
Query: 456 AVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVE 635
A+KR+ + +Q+E+ + + V+ G K V K + + V+K V+
Sbjct: 227 ALKRIQD-QQVESVQVQPKVRGGAKGKKKAATKSATKKTVAAKKTAESADVRKSVDKIVK 285
Query: 636 -TPKKSISAVKTPEKKIPTPXXXXXXXXXXXSPANGKAHFNKSP 764
TP K S +TP+K P + + K N SP
Sbjct: 286 YTPNKPSSRKETPQKSQSAPAAGKSSAKRTTTGSKTKIPANPSP 329
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains:
MAP1 light chain LC1]
Length = 2459
Score = 32.3 bits (72), Expect = 1.5
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Frame = +3
Query: 318 EFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAK 497
E P +A+++ E+T +E + V+ + +K V + E V E ++A+
Sbjct: 563 EAPEATKASQV--EKTPKVESKEKVI--VKKDKPGKVESKPSVTEKEVPSKEEQSPVKAE 618
Query: 498 KAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESANKVEKKVETPKKSISAV--KTP 671
AEK + V K K++ EKK E PKK ++ KTP
Sbjct: 619 VAEKAATESKPK-------------VTKDKVVKKEIKTKPEEKKEEKPKKEVAKKEDKTP 665
Query: 672 EKKIPTP 692
KK P
Sbjct: 666 LKKDEKP 672
>sp|Q9QYR6|MAP1A_MOUSE Microtubule-associated protein 1A (MAP 1A)
Length = 1021
Score = 32.0 bits (71), Expect = 1.9
Identities = 31/142 (21%), Positives = 61/142 (42%)
Frame = +3
Query: 255 ALAKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHD 434
A+ + K +K+ +++ L+ K +K+ E V EG+K + L E +
Sbjct: 527 AVPANLKPSKIKHRADSKESLKAAPKTAMSKLAKREEVLEEGAKEARSELAKELAKSEKK 586
Query: 435 AAEIPEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTESAN 614
A E E ++ ++PE++ + +E +KA ++ + K E +
Sbjct: 587 AKEPSEKPPEKPSKPERVRTESSE-ALKAEKRK-----------LIKDKVGKKHLKEKIS 634
Query: 615 KVEKKVETPKKSISAVKTPEKK 680
K+E+K + KK I + KK
Sbjct: 635 KLEEKRDKEKKEIKKERKELKK 656
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
[Contains: MAP1 light chain LC1]
Length = 2464
Score = 32.0 bits (71), Expect = 1.9
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 6/157 (3%)
Frame = +3
Query: 240 KDITDAL-AKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEK 416
KD+T + K K+ + +++ L+ +K A+K +E+ E + V EK
Sbjct: 519 KDLTGQVPTPPVKQVKLKQRADSRESLKPATKPVASKSVRKESK--EETPEVTKTSQVEK 576
Query: 417 SNLVHDAAEI---PEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCXXXXXXXXXVVKKTK 587
+ V ++ + VK ++P E + + K ++ VK V K K
Sbjct: 577 TPKVESKEKVLVKKDKPVKTESKPSVTEKEVSSKEEQSPVKAEVAEKQATESKPKVTKDK 636
Query: 588 MIDGTESANKVEKKVETPKKSI--SAVKTPEKKIPTP 692
++ EKK E PKK + KTP KK P
Sbjct: 637 VVKKEIKTKLEEKKEEKPKKEVVKKEDKTPLKKDEKP 673
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 (Uncoordinated protein 89)
Length = 8081
Score = 31.6 bits (70), Expect = 2.5
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Frame = +3
Query: 327 SKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAKKAE 506
S + N + TIE ++ + + + H++ E +VK+ PE+++ K
Sbjct: 1489 SPDATNIVEVSSETTIEKTETTMT------TEMTHESEE-SRTSVKKEKTPEKVDEKPKS 1541
Query: 507 KTVKAGVKRSNCXXXXXXXXXVVKKTKMIDGTE----SANKVEKKVETP----KKSISAV 662
T K +S VKK K + E S K EK E P KKS + V
Sbjct: 1542 PTKK---DKSPEKSITEEIKSPVKKEKSPEKVEEKPASPTKKEKSPEKPASPTKKSENEV 1598
Query: 663 KTPEKKIPTP 692
K+P KK +P
Sbjct: 1599 KSPTKKEKSP 1608
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 (RNA-binding motif protein 28)
Length = 759
Score = 31.2 bits (69), Expect = 3.2
Identities = 45/228 (19%), Positives = 85/228 (37%)
Frame = +3
Query: 6 SIISINLPGKMKKKGLQLRGYGFARFXXXXXXXXXXXXXNSHEIDGKKMKATPYVCRKIY 185
+++ +N+P K K +RG+GF +F N EI G+ + V + Y
Sbjct: 139 AVLEVNIPRKPDGK---MRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKY 195
Query: 186 NDINKVNFSKLIAQTFEDKDITDALAKHYKSAKVTKYMNTQYGLEFPSKEEANKIFNEET 365
D ++ ++ E+K +KH +S K + G E EE +++
Sbjct: 196 KD------TQSVSAIGEEKSHE---SKHQESVK-------KKGREEEDMEEEENDDDDDD 239
Query: 366 VTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAEPEQIEAKKAEKTVKAGVKRSNCX 545
E+ + D E E +V +P QI+ + ++ A K S+
Sbjct: 240 DD-------------EEDGVFDDEDEEEENIESKVTKPVQIQKRAVKRPAPA--KSSD-- 282
Query: 546 XXXXXXXXVVKKTKMIDGTESANKVEKKVETPKKSISAVKTPEKKIPT 689
+ + + DG E A E K++ ++K+P+
Sbjct: 283 -HSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPS 329
>sp|P41697|BUD6_YEAST Bud site selection protein BUD6 (Actin-interacting protein 3)
Length = 788
Score = 30.4 bits (67), Expect = 5.5
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Frame = +3
Query: 123 NSHEIDGKKMKATPYVCRKIYNDINKVNFSKLIAQTFEDKDITDALAK--HYKSAKVTKY 296
N H++ G+ K + I ++ K+ I ++ ++ I + L K ++KS
Sbjct: 492 NKHDLVGQNKKDDDKTIKDIQYELGKIKQVHNINRSNINETIFNILRKVDNFKS------ 545
Query: 297 MNTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEIPEVAVKRVAE 476
L F +K +N+++ E++ T G L + V D ++ E+ K VAE
Sbjct: 546 ------LSFSAKNSSNRMYMEKSQTELGD------LSDTLLSKVDDLQDVIEIMRKDVAE 593
Query: 477 PEQIEAKKAEKTVKAGVKRS 536
AKK +TV ++ +
Sbjct: 594 RRSQPAKKKLETVSKDLENA 613
>sp|P04769|PLFR_MOUSE Proliferin-related protein precursor (PRP)
Length = 244
Score = 30.0 bits (66), Expect = 7.2
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Frame = +3
Query: 123 NSHEIDGKKMKATPYVCRKIY-NDINKVNFSKLIAQTFEDKDITDALAKHYKSAKVTKYM 299
N+ + G+ K + ++ + N + F+K+I L H + +TK
Sbjct: 49 NATVLSGEMSKLGVIMRKEFFMNSFSSETFNKII------------LDLHKSTENITKAF 96
Query: 300 NTQYGLEFPSKEEANKIFNEETVTIEGSKMVLNYLYAEKSNLVHDAAEI---PEVAVKRV 470
N+ + + E + +T E KMVL+ L A K L H E+ PE + +
Sbjct: 97 NSCHTVPINVPETVEDV--RKTSFEEFLKMVLHMLLAWKEPLKHLVTELSALPECPYRIL 154
Query: 471 AEPEQIEAKKAE 506
++ E IEAK +
Sbjct: 155 SKAEAIEAKNKD 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,996,222
Number of Sequences: 369166
Number of extensions: 1500578
Number of successful extensions: 4575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4568
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)