Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_M17
(634 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38748|YHB0_YEAST Hypothetical 67.5 kDa protein in PRPS4... 31 2.3
sp|Q04952|GLS3_YEAST 1,3-beta-glucan synthase component FKS... 30 5.1
sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding peripla... 30 5.1
sp|P82798|ATRX_MACEU Transcriptional regulator ATRX (X-link... 30 5.1
sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 (RNA-binding m... 30 6.7
sp|P57475|RIMM_BUCAI 16S rRNA processing protein rimM 29 8.8
sp|Q88EI7|ASTE_PSEPK Succinylglutamate desuccinylase 29 8.8
>sp|P38748|YHB0_YEAST Hypothetical 67.5 kDa protein in PRPS4-STE20 intergenic region
Length = 585
Score = 31.2 bits (69), Expect = 2.3
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Frame = +2
Query: 146 ATKRIWICPIC*N*GC-----KESYRHYKFT--------RNRRKKDEGSSLCLQENLQRH 286
+T +WIC IC N GC K + +HY+ T R +R D + +Q
Sbjct: 306 STDNLWICLICGNVGCGRYNSKHAIKHYEETLHCFAMDIRTQRVWDYAGDNYVHRLVQNE 365
Query: 287 QQSKLLEI 310
KL+E+
Sbjct: 366 VDGKLVEV 373
>sp|Q04952|GLS3_YEAST 1,3-beta-glucan synthase component FKS3 (1,3-beta-D-glucan-UDP
glucosyltransferase)
Length = 1785
Score = 30.0 bits (66), Expect = 5.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 241 FFPSISCEFIMSIAFFASSILANRANPYPLSCKPFFFI 128
FFPS S E I+FFA S+ + P P+ C P F +
Sbjct: 694 FFPSNS-EAKRRISFFAQSLATPISEPVPVDCMPTFTV 730
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 precursor
(SPBP)
Length = 350
Score = 30.0 bits (66), Expect = 5.1
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 258 YVCRKIYNDINKVNFSKLIAQTFEDKDITDAIARHYKSAKVTKYMNTQYGLEFPSKEEAN 437
YV + +K ++I TFE + Y K+T+ + Y L FPS N
Sbjct: 38 YVPSDLVAQFSKETGIEVIYSTFESNE------EMYAKLKLTQNTGSGYDLVFPSSYYVN 91
Query: 438 KIFNEETV-TIEGSKLVFIY 494
K+ E+ + I+ SKL I+
Sbjct: 92 KMIKEKMLQPIDQSKLTNIH 111
>sp|P82798|ATRX_MACEU Transcriptional regulator ATRX (X-linked nuclear protein)
Length = 497
Score = 30.0 bits (66), Expect = 5.1
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 247 FIFFPSISCEFIMSIAFFASSILANRANPYPLSCKPFFFIFPGKLIEIIDNL-FSFKMLV 71
FIFF SC F++S +F SC IF L++I+D L F F
Sbjct: 387 FIFFELSSCYFLLSSSFLFQ------------SCFSLTSIF---LLQIVDLLFFKFYFFF 431
Query: 70 KASLVKLDDILVINITTSL 14
K SL+ + + ++++ SL
Sbjct: 432 KISLISIFLLQIVHLLFSL 450
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 (RNA-binding motif protein 28)
Length = 759
Score = 29.6 bits (65), Expect = 6.7
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 99 SIISINLPGKMKKKGLQLRGYGFARFXXXXXXXXXXXXXNSHEIDGKKMKAAPYVCRKIY 278
+++ +N+P K K +RG+GF +F N EI G+ + V + Y
Sbjct: 139 AVLEVNIPRKPDGK---MRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKY 195
Query: 279 NDINKVN 299
D V+
Sbjct: 196 KDTQSVS 202
>sp|P57475|RIMM_BUCAI 16S rRNA processing protein rimM
Length = 176
Score = 29.3 bits (64), Expect = 8.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 581 DWFWFRNSLYSHFRDFG--SVVHQVRLIRVQIDKHQFAALDCNSFLVEDFISF 429
+W ++N+ H +D SVV Q + I KH AL N + D I++
Sbjct: 61 NWKKYKNNFIVHIKDISDRSVVSQFTNADIIISKHTLPALKKNDYYWNDIINY 113
>sp|Q88EI7|ASTE_PSEPK Succinylglutamate desuccinylase
Length = 335
Score = 29.3 bits (64), Expect = 8.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 399 QYGLEFPSKEEANKIFNEETVTIEGSKLVFIYLYAYKSNLVHDAAEIPEVA 551
Q+ F SK N++ + I GSK+ LY YK H E+ +A
Sbjct: 132 QFARVFFSKPGRNRLHYDLHTAIRGSKIEQFALYPYKEGRKHSRRELARLA 182
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,857,775
Number of Sequences: 369166
Number of extensions: 1358427
Number of successful extensions: 3715
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)