Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_J10
(733 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5... 30 6.6
sp|Q8NHU3|SMS2_HUMAN Phosphatidylcholine:ceramide cholineph... 30 8.6
>sp|P24884|NU5M_ASCSU NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 547
Score = 30.0 bits (66), Expect = 6.6
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -1
Query: 694 LLLFIEFLISRRILSFVSSRRLLIELFFIQWRFVKMRFSI 575
L++F+ F +S ++ FVS +L FF++W F+ + S+
Sbjct: 7 LMVFLLFCVSLFLIFFVSCVKL--SFFFVEWDFLSFKISV 44
>sp|Q8NHU3|SMS2_HUMAN Phosphatidylcholine:ceramide cholinephosphotransferase 2
(Sphingomyelin synthase 2)
Length = 365
Score = 29.6 bits (65), Expect = 8.6
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 631 LLIELFFIQWRFVKMRFSIGRRFVFLL 551
+L+ L+ QW F++ + +GRRF F++
Sbjct: 137 ILVGLWITQWLFLRYKSIVGRRFCFII 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,567,470
Number of Sequences: 369166
Number of extensions: 1340062
Number of successful extensions: 4046
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4044
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)