Planaria EST Database

DrC_00709

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00709
         (302 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O44125|RL37_SCHMA  60S ribosomal protein L37                   144   6e-35
sp|Q9C0T1|RL37_EMENI  60S ribosomal protein L37                   137   6e-33
sp|P05733|RL37B_SCHPO  60S ribosomal protein L37-B (L37-2) (...   135   2e-32
sp|Q9VXX8|RL371_DROME  Probable 60S ribosomal protein L37-A       135   3e-32
sp|P59289|RL37A_SCHPO  60S ribosomal protein L37-A (L37-1)        134   5e-32
sp|Q962S7|RL37_SPOFR  60S ribosomal protein L37                   131   4e-31
sp|Q9W1U6|RL372_DROME  Probable 60S ribosomal protein L37-B       127   1e-29
sp|P51402|RL37B_YEAST  60S ribosomal protein L37-B (L35) (YP55)   124   7e-29
sp|P49166|RL37A_YEAST  60S ribosomal protein L37-A (L35) (YP55)   124   7e-29
sp|P49622|RL37_CAEEL  60S ribosomal protein L37                   122   3e-28

>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
          Length = 88

 Score =  144 bits (363), Expect = 6e-35
 Identities = 62/83 (74%), Positives = 72/83 (86%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGTTSFGKRHNK+HT CRRCG+ S+HIQKKTC+SC YP+ ++R +NWS KA+ RRTTG
Sbjct: 1   MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
           TGR LHLK +HRRFK GFRSG P
Sbjct: 61  TGRMLHLKRVHRRFKQGFRSGPP 83

>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
          Length = 92

 Score =  137 bits (346), Expect = 6e-33
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGT+SFGKRHNKTHT CRRCG+ S+HIQK TCA+C YP  K R +NWS KA+ R+TTG
Sbjct: 1   MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
           +GR  HL+D+HRRFKNGF+ G P
Sbjct: 61  SGRTAHLRDVHRRFKNGFQVGTP 83

>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
          Length = 91

 Score =  135 bits (341), Expect = 2e-32
 Identities = 60/83 (72%), Positives = 65/83 (78%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP  K R +NW  KA+ RRTTG
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
           TGR  +LK +HR FKNGFRSGKP
Sbjct: 61  TGRMSYLKKVHRSFKNGFRSGKP 83

>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
          Length = 93

 Score =  135 bits (340), Expect = 3e-32
 Identities = 58/81 (71%), Positives = 67/81 (82%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGT+SFGKRHNKTHT CRRCG+SS+HIQK TCA C YP  K+R +NWS KA+ R+TTG
Sbjct: 1   MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
           TGR  HLK + RRF+NGFR G
Sbjct: 61  TGRMQHLKVVRRRFRNGFREG 81

>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
          Length = 89

 Score =  134 bits (338), Expect = 5e-32
 Identities = 59/83 (71%), Positives = 65/83 (78%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP  K R +NW  KA+ RRTTG
Sbjct: 1   MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
           TGR  +LK +HR FKNGFR+GKP
Sbjct: 61  TGRMSYLKKVHRSFKNGFRAGKP 83

>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
          Length = 92

 Score =  131 bits (330), Expect = 4e-31
 Identities = 56/83 (67%), Positives = 67/83 (80%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGT+SFGKR NKTHT CRRCG+SS+HIQK  CA C YP  K+R ++WS KA+ R+TTG
Sbjct: 1   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
           TGR  HLK + RRF+NGF+ GKP
Sbjct: 61  TGRMRHLKIVRRRFRNGFKEGKP 83

>sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B
          Length = 89

 Score =  127 bits (318), Expect = 1e-29
 Identities = 54/81 (66%), Positives = 63/81 (77%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGTTSFGKRHNKTHT CRRCG SS+H+QK  C+ C YP  K R FNWS KA+GR+  G
Sbjct: 1   MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
           TGR  +LK++ RRF+NG R G
Sbjct: 61  TGRMRYLKNLRRRFRNGLREG 81

>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55)
          Length = 88

 Score =  124 bits (311), Expect = 7e-29
 Identities = 53/81 (65%), Positives = 64/81 (79%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           M KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP+ K R  NW+ KA+ R TTG
Sbjct: 1   MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
           TGR  +LK + RRFKNGF++G
Sbjct: 61  TGRMRYLKHVSRRFKNGFQTG 81

>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55)
          Length = 88

 Score =  124 bits (311), Expect = 7e-29
 Identities = 53/81 (65%), Positives = 63/81 (77%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           M KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP  K R +NW  KA+ R TTG
Sbjct: 1   MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
           TGR  +LK + RRFKNGF++G
Sbjct: 61  TGRMRYLKHVSRRFKNGFQTG 81

>sp|P49622|RL37_CAEEL 60S ribosomal protein L37
          Length = 91

 Score =  122 bits (305), Expect = 3e-28
 Identities = 53/83 (63%), Positives = 64/83 (77%)
 Frame = +1

Query: 10  MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
           MTKGT +FGK+H K+HT C+RCGKSSFHIQKK CASC Y + K R +NW  K+  RRTTG
Sbjct: 1   MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60

Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
           TGR  HL+D++ RF+NGFR   P
Sbjct: 61  TGRTRHLRDVNARFRNGFRGTTP 83

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,537,945
Number of Sequences: 369166
Number of extensions: 611903
Number of successful extensions: 1461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00709

  1. Dr_sW_021_A07
  2. Dr_sW_018_I10
  3. Dr_sW_010_D22
  4. Dr_sW_015_O22
  5. Dr_sW_028_M06
  6. Dr_sW_015_M24