Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_M06
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44125|RL37_SCHMA 60S ribosomal protein L37 134 7e-32
sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37 127 6e-30
sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (... 126 2e-29
sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A 125 3e-29
sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1) 125 4e-29
sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 121 4e-28
sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55) 117 8e-27
sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55) 117 8e-27
sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B 117 1e-26
sp|Q9P836|RL37_CANAL 60S ribosomal protein L37 116 2e-26
>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
Length = 88
Score = 134 bits (337), Expect = 7e-32
Identities = 57/78 (73%), Positives = 67/78 (85%)
Frame = +2
Query: 2 TSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCL 181
TSFGKRHNK+HT CRRCG+ S+HIQKKTC+SC YP+ ++R +NWS KA+ RRTTGTGR L
Sbjct: 6 TSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRML 65
Query: 182 HLKDIHRRFKNGFRSGKP 235
HLK +HRRFK GFRSG P
Sbjct: 66 HLKRVHRRFKQGFRSGPP 83
>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
Length = 92
Score = 127 bits (320), Expect = 6e-30
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +2
Query: 2 TSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCL 181
+SFGKRHNKTHT CRRCG+ S+HIQK TCA+C YP K R +NWS KA+ R+TTG+GR
Sbjct: 6 SSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTA 65
Query: 182 HLKDIHRRFKNGFRSGKP 235
HL+D+HRRFKNGF+ G P
Sbjct: 66 HLRDVHRRFKNGFQVGTP 83
>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
Length = 91
Score = 126 bits (316), Expect = 2e-29
Identities = 55/77 (71%), Positives = 60/77 (77%)
Frame = +2
Query: 5 SFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLH 184
SFG RHNK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTGTGR +
Sbjct: 7 SFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSY 66
Query: 185 LKDIHRRFKNGFRSGKP 235
LK +HR FKNGFRSGKP
Sbjct: 67 LKKVHRSFKNGFRSGKP 83
>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
Length = 93
Score = 125 bits (314), Expect = 3e-29
Identities = 53/76 (69%), Positives = 62/76 (81%)
Frame = +2
Query: 2 TSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCL 181
+SFGKRHNKTHT CRRCG+SS+HIQK TCA C YP K+R +NWS KA+ R+TTGTGR
Sbjct: 6 SSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQ 65
Query: 182 HLKDIHRRFKNGFRSG 229
HLK + RRF+NGFR G
Sbjct: 66 HLKVVRRRFRNGFREG 81
>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
Length = 89
Score = 125 bits (313), Expect = 4e-29
Identities = 54/77 (70%), Positives = 60/77 (77%)
Frame = +2
Query: 5 SFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLH 184
SFG RHNK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTGTGR +
Sbjct: 7 SFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSY 66
Query: 185 LKDIHRRFKNGFRSGKP 235
LK +HR FKNGFR+GKP
Sbjct: 67 LKKVHRSFKNGFRAGKP 83
>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
Length = 92
Score = 121 bits (304), Expect = 4e-28
Identities = 51/78 (65%), Positives = 62/78 (79%)
Frame = +2
Query: 2 TSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCL 181
+SFGKR NKTHT CRRCG+SS+HIQK CA C YP K+R ++WS KA+ R+TTGTGR
Sbjct: 6 SSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMR 65
Query: 182 HLKDIHRRFKNGFRSGKP 235
HLK + RRF+NGF+ GKP
Sbjct: 66 HLKIVRRRFRNGFKEGKP 83
>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55)
Length = 88
Score = 117 bits (293), Expect = 8e-27
Identities = 49/75 (65%), Positives = 60/75 (80%)
Frame = +2
Query: 5 SFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLH 184
SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP+ K R NW+ KA+ R TTGTGR +
Sbjct: 7 SFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRY 66
Query: 185 LKDIHRRFKNGFRSG 229
LK + RRFKNGF++G
Sbjct: 67 LKHVSRRFKNGFQTG 81
>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55)
Length = 88
Score = 117 bits (293), Expect = 8e-27
Identities = 49/75 (65%), Positives = 59/75 (78%)
Frame = +2
Query: 5 SFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLH 184
SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP K R +NW KA+ R TTGTGR +
Sbjct: 7 SFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRY 66
Query: 185 LKDIHRRFKNGFRSG 229
LK + RRFKNGF++G
Sbjct: 67 LKHVSRRFKNGFQTG 81
>sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B
Length = 89
Score = 117 bits (292), Expect = 1e-26
Identities = 49/76 (64%), Positives = 58/76 (76%)
Frame = +2
Query: 2 TSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCL 181
TSFGKRHNKTHT CRRCG SS+H+QK C+ C YP K R FNWS KA+GR+ GTGR
Sbjct: 6 TSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTGRMR 65
Query: 182 HLKDIHRRFKNGFRSG 229
+LK++ RRF+NG R G
Sbjct: 66 YLKNLRRRFRNGLREG 81
>sp|Q9P836|RL37_CANAL 60S ribosomal protein L37
Length = 88
Score = 116 bits (290), Expect = 2e-26
Identities = 49/75 (65%), Positives = 60/75 (80%)
Frame = +2
Query: 5 SFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLH 184
S GKRHNK+HT C RCG+ SFH+QKKTC+SC YP K+R NW+ KA+ RRTTGTGR +
Sbjct: 5 SLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAY 64
Query: 185 LKDIHRRFKNGFRSG 229
LK + RRFKNGF++G
Sbjct: 65 LKHVTRRFKNGFQTG 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,783,154
Number of Sequences: 369166
Number of extensions: 545386
Number of successful extensions: 1243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)