Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O22
(114 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44125|RL37_SCHMA 60S ribosomal protein L37 43 3e-04
sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (... 41 0.001
sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1) 40 0.002
sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37 40 0.002
sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 38 0.008
sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A 34 0.093
sp|P49622|RL37_CAEEL 60S ribosomal protein L37 34 0.12
sp|Q90YT1|RL37_ICTPU 60S ribosomal protein L37 33 0.21
sp|P61928|RL37_RAT 60S ribosomal protein L37 >gi|48428680|s... 33 0.21
sp|P79244|RL37_BOVIN 60S ribosomal protein L37 33 0.21
>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
Length = 88
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSGKP 70
TGR LHLK +HRRFK GFRSG P
Sbjct: 61 TGRMLHLKRVHRRFKQGFRSGPP 83
>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
Length = 91
Score = 40.8 bits (94), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSGKP 70
TGR +LK +HR FKNGFRSGKP
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKP 83
>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
Length = 89
Score = 39.7 bits (91), Expect = 0.002
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSGKP 70
TGR +LK +HR FKNGFR+GKP
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKP 83
>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
Length = 92
Score = 39.7 bits (91), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSGKP 70
+GR HL+D+HRRFKNGF+ G P
Sbjct: 61 SGRTAHLRDVHRRFKNGFQVGTP 83
>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
Length = 92
Score = 37.7 bits (86), Expect = 0.008
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSGKP 70
TGR HLK + RRF+NGF+ GKP
Sbjct: 61 TGRMRHLKIVRRRFRNGFKEGKP 83
>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
Length = 93
Score = 34.3 bits (77), Expect = 0.093
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSG 64
TGR HLK + RRF+NGFR G
Sbjct: 61 TGRMQHLKVVRRRFRNGFREG 81
>sp|P49622|RL37_CAEEL 60S ribosomal protein L37
Length = 91
Score = 33.9 bits (76), Expect = 0.12
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSGKP 70
TGR HL+D++ RF+NGFR P
Sbjct: 61 TGRTRHLRDVNARFRNGFRGTTP 83
>sp|Q90YT1|RL37_ICTPU 60S ribosomal protein L37
Length = 97
Score = 33.1 bits (74), Expect = 0.21
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSG 64
TGR H+K + RRF+NGFR G
Sbjct: 61 TGRMRHMKVVFRRFRNGFREG 81
>sp|P61928|RL37_RAT 60S ribosomal protein L37
sp|Q9D823|RL37_MOUSE 60S ribosomal protein L37
sp|P61927|RL37_HUMAN 60S ribosomal protein L37 (G1.16)
Length = 97
Score = 33.1 bits (74), Expect = 0.21
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSG 64
TGR HLK ++RRF++GFR G
Sbjct: 61 TGRMRHLKIVYRRFRHGFREG 81
>sp|P79244|RL37_BOVIN 60S ribosomal protein L37
Length = 93
Score = 33.1 bits (74), Expect = 0.21
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 2 TGRCLHLKDIHRRFKNGFRSG 64
TGR HLK ++RRF++GFR G
Sbjct: 61 TGRMRHLKIVYRRFRHGFREG 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,346,099
Number of Sequences: 369166
Number of extensions: 121577
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 68,354,980
effective HSP length: 11
effective length of database: 66,322,895
effective search space used: 1724395270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)