Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_I10
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44125|RL37_SCHMA 60S ribosomal protein L37 144 6e-35
sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37 137 6e-33
sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (... 135 2e-32
sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A 135 3e-32
sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1) 134 5e-32
sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 131 4e-31
sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B 127 1e-29
sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55) 124 7e-29
sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55) 124 7e-29
sp|P49622|RL37_CAEEL 60S ribosomal protein L37 122 3e-28
>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
Length = 88
Score = 144 bits (363), Expect = 6e-35
Identities = 62/83 (74%), Positives = 72/83 (86%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGTTSFGKRHNK+HT CRRCG+ S+HIQKKTC+SC YP+ ++R +NWS KA+ RRTTG
Sbjct: 1 MTKGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
TGR LHLK +HRRFK GFRSG P
Sbjct: 61 TGRMLHLKRVHRRFKQGFRSGPP 83
>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
Length = 92
Score = 137 bits (346), Expect = 6e-33
Identities = 58/83 (69%), Positives = 69/83 (83%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGT+SFGKRHNKTHT CRRCG+ S+HIQK TCA+C YP K R +NWS KA+ R+TTG
Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
+GR HL+D+HRRFKNGF+ G P
Sbjct: 61 SGRTAHLRDVHRRFKNGFQVGTP 83
>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
Length = 91
Score = 135 bits (341), Expect = 2e-32
Identities = 60/83 (72%), Positives = 65/83 (78%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTG
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
TGR +LK +HR FKNGFRSGKP
Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKP 83
>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
Length = 93
Score = 135 bits (340), Expect = 3e-32
Identities = 58/81 (71%), Positives = 67/81 (82%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGT+SFGKRHNKTHT CRRCG+SS+HIQK TCA C YP K+R +NWS KA+ R+TTG
Sbjct: 1 MTKGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
TGR HLK + RRF+NGFR G
Sbjct: 61 TGRMQHLKVVRRRFRNGFREG 81
>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
Length = 89
Score = 134 bits (338), Expect = 5e-32
Identities = 59/83 (71%), Positives = 65/83 (78%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTG
Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
TGR +LK +HR FKNGFR+GKP
Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKP 83
>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
Length = 92
Score = 131 bits (330), Expect = 4e-31
Identities = 56/83 (67%), Positives = 67/83 (80%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGT+SFGKR NKTHT CRRCG+SS+HIQK CA C YP K+R ++WS KA+ R+TTG
Sbjct: 1 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
TGR HLK + RRF+NGF+ GKP
Sbjct: 61 TGRMRHLKIVRRRFRNGFKEGKP 83
>sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B
Length = 89
Score = 127 bits (318), Expect = 1e-29
Identities = 54/81 (66%), Positives = 63/81 (77%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGTTSFGKRHNKTHT CRRCG SS+H+QK C+ C YP K R FNWS KA+GR+ G
Sbjct: 1 MTKGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
TGR +LK++ RRF+NG R G
Sbjct: 61 TGRMRYLKNLRRRFRNGLREG 81
>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55)
Length = 88
Score = 124 bits (311), Expect = 7e-29
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
M KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP+ K R NW+ KA+ R TTG
Sbjct: 1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
TGR +LK + RRFKNGF++G
Sbjct: 61 TGRMRYLKHVSRRFKNGFQTG 81
>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55)
Length = 88
Score = 124 bits (311), Expect = 7e-29
Identities = 53/81 (65%), Positives = 63/81 (77%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
M KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP K R +NW KA+ R TTG
Sbjct: 1 MGKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSG 252
TGR +LK + RRFKNGF++G
Sbjct: 61 TGRMRYLKHVSRRFKNGFQTG 81
>sp|P49622|RL37_CAEEL 60S ribosomal protein L37
Length = 91
Score = 122 bits (305), Expect = 3e-28
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = +1
Query: 10 MTKGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTG 189
MTKGT +FGK+H K+HT C+RCGKSSFHIQKK CASC Y + K R +NW K+ RRTTG
Sbjct: 1 MTKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTG 60
Query: 190 TGRCLHLKDIHRRFKNGFRSGKP 258
TGR HL+D++ RF+NGFR P
Sbjct: 61 TGRTRHLRDVNARFRNGFRGTTP 83
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,537,945
Number of Sequences: 369166
Number of extensions: 611903
Number of successful extensions: 1461
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)