Planarian EST Database


Dr_sW_015_M24

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_015_M24
         (288 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O44125|RL37_SCHMA  60S ribosomal protein L37                   140   9e-34
sp|Q9C0T1|RL37_EMENI  60S ribosomal protein L37                   134   8e-32
sp|P05733|RL37B_SCHPO  60S ribosomal protein L37-B (L37-2) (...   132   3e-31
sp|Q9VXX8|RL371_DROME  Probable 60S ribosomal protein L37-A       131   4e-31
sp|P59289|RL37A_SCHPO  60S ribosomal protein L37-A (L37-1)        130   7e-31
sp|Q962S7|RL37_SPOFR  60S ribosomal protein L37                   127   6e-30
sp|Q9W1U6|RL372_DROME  Probable 60S ribosomal protein L37-B       123   1e-28
sp|P51402|RL37B_YEAST  60S ribosomal protein L37-B (L35) (YP55)   123   1e-28
sp|P49166|RL37A_YEAST  60S ribosomal protein L37-A (L35) (YP55)   123   1e-28
sp|Q9P836|RL37_CANAL  60S ribosomal protein L37                   120   1e-27
>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
          Length = 88

 Score =  140 bits (353), Expect = 9e-34
 Identities = 60/81 (74%), Positives = 70/81 (86%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGTTSFGKRHNK+HT CRRCG+ S+HIQKKTC+SC YP+ ++R +NWS KA+ RRTTGTG
Sbjct: 3   KGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
           R LHLK +HRRFK GFRSG P
Sbjct: 63  RMLHLKRVHRRFKQGFRSGPP 83
>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
          Length = 92

 Score =  134 bits (336), Expect = 8e-32
 Identities = 56/81 (69%), Positives = 67/81 (82%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT+SFGKRHNKTHT CRRCG+ S+HIQK TCA+C YP  K R +NWS KA+ R+TTG+G
Sbjct: 3   KGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSG 62

Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
           R  HL+D+HRRFKNGF+ G P
Sbjct: 63  RTAHLRDVHRRFKNGFQVGTP 83
>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
          Length = 91

 Score =  132 bits (331), Expect = 3e-31
 Identities = 58/81 (71%), Positives = 63/81 (77%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP  K R +NW  KA+ RRTTGTG
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
           R  +LK +HR FKNGFRSGKP
Sbjct: 63  RMSYLKKVHRSFKNGFRSGKP 83
>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
          Length = 93

 Score =  131 bits (330), Expect = 4e-31
 Identities = 56/79 (70%), Positives = 65/79 (82%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT+SFGKRHNKTHT CRRCG+SS+HIQK TCA C YP  K+R +NWS KA+ R+TTGTG
Sbjct: 3   KGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSG 238
           R  HLK + RRF+NGFR G
Sbjct: 63  RMQHLKVVRRRFRNGFREG 81
>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
          Length = 89

 Score =  130 bits (328), Expect = 7e-31
 Identities = 57/81 (70%), Positives = 63/81 (77%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP  K R +NW  KA+ RRTTGTG
Sbjct: 3   KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
           R  +LK +HR FKNGFR+GKP
Sbjct: 63  RMSYLKKVHRSFKNGFRAGKP 83
>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
          Length = 92

 Score =  127 bits (320), Expect = 6e-30
 Identities = 54/81 (66%), Positives = 65/81 (80%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT+SFGKR NKTHT CRRCG+SS+HIQK  CA C YP  K+R ++WS KA+ R+TTGTG
Sbjct: 3   KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
           R  HLK + RRF+NGF+ GKP
Sbjct: 63  RMRHLKIVRRRFRNGFKEGKP 83
>sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B
          Length = 89

 Score =  123 bits (308), Expect = 1e-28
 Identities = 52/79 (65%), Positives = 61/79 (77%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGTTSFGKRHNKTHT CRRCG SS+H+QK  C+ C YP  K R FNWS KA+GR+  GTG
Sbjct: 3   KGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSG 238
           R  +LK++ RRF+NG R G
Sbjct: 63  RMRYLKNLRRRFRNGLREG 81
>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55)
          Length = 88

 Score =  123 bits (308), Expect = 1e-28
 Identities = 52/79 (65%), Positives = 63/79 (79%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP+ K R  NW+ KA+ R TTGTG
Sbjct: 3   KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSG 238
           R  +LK + RRFKNGF++G
Sbjct: 63  RMRYLKHVSRRFKNGFQTG 81
>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55)
          Length = 88

 Score =  123 bits (308), Expect = 1e-28
 Identities = 52/79 (65%), Positives = 62/79 (78%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP  K R +NW  KA+ R TTGTG
Sbjct: 3   KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTG 62

Query: 182 RCLHLKDIHRRFKNGFRSG 238
           R  +LK + RRFKNGF++G
Sbjct: 63  RMRYLKHVSRRFKNGFQTG 81
>sp|Q9P836|RL37_CANAL 60S ribosomal protein L37
          Length = 88

 Score =  120 bits (301), Expect = 1e-27
 Identities = 51/79 (64%), Positives = 63/79 (79%)
 Frame = +2

Query: 2   KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
           +GT S GKRHNK+HT C RCG+ SFH+QKKTC+SC YP  K+R  NW+ KA+ RRTTGTG
Sbjct: 1   EGTPSLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTG 60

Query: 182 RCLHLKDIHRRFKNGFRSG 238
           R  +LK + RRFKNGF++G
Sbjct: 61  RMAYLKHVTRRFKNGFQTG 79
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,949,063
Number of Sequences: 369166
Number of extensions: 574165
Number of successful extensions: 1401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)