Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M24
(288 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44125|RL37_SCHMA 60S ribosomal protein L37 140 9e-34
sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37 134 8e-32
sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (... 132 3e-31
sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A 131 4e-31
sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1) 130 7e-31
sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 127 6e-30
sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B 123 1e-28
sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55) 123 1e-28
sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55) 123 1e-28
sp|Q9P836|RL37_CANAL 60S ribosomal protein L37 120 1e-27
>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
Length = 88
Score = 140 bits (353), Expect = 9e-34
Identities = 60/81 (74%), Positives = 70/81 (86%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGTTSFGKRHNK+HT CRRCG+ S+HIQKKTC+SC YP+ ++R +NWS KA+ RRTTGTG
Sbjct: 3 KGTTSFGKRHNKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
R LHLK +HRRFK GFRSG P
Sbjct: 63 RMLHLKRVHRRFKQGFRSGPP 83
>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
Length = 92
Score = 134 bits (336), Expect = 8e-32
Identities = 56/81 (69%), Positives = 67/81 (82%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT+SFGKRHNKTHT CRRCG+ S+HIQK TCA+C YP K R +NWS KA+ R+TTG+G
Sbjct: 3 KGTSSFGKRHNKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSG 62
Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
R HL+D+HRRFKNGF+ G P
Sbjct: 63 RTAHLRDVHRRFKNGFQVGTP 83
>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
Length = 91
Score = 132 bits (331), Expect = 3e-31
Identities = 58/81 (71%), Positives = 63/81 (77%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTGTG
Sbjct: 3 KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
R +LK +HR FKNGFRSGKP
Sbjct: 63 RMSYLKKVHRSFKNGFRSGKP 83
>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
Length = 93
Score = 131 bits (330), Expect = 4e-31
Identities = 56/79 (70%), Positives = 65/79 (82%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT+SFGKRHNKTHT CRRCG+SS+HIQK TCA C YP K+R +NWS KA+ R+TTGTG
Sbjct: 3 KGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSG 238
R HLK + RRF+NGFR G
Sbjct: 63 RMQHLKVVRRRFRNGFREG 81
>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
Length = 89
Score = 130 bits (328), Expect = 7e-31
Identities = 57/81 (70%), Positives = 63/81 (77%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT SFG RHNK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTGTG
Sbjct: 3 KGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
R +LK +HR FKNGFR+GKP
Sbjct: 63 RMSYLKKVHRSFKNGFRAGKP 83
>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
Length = 92
Score = 127 bits (320), Expect = 6e-30
Identities = 54/81 (66%), Positives = 65/81 (80%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT+SFGKR NKTHT CRRCG+SS+HIQK CA C YP K+R ++WS KA+ R+TTGTG
Sbjct: 3 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSGKP 244
R HLK + RRF+NGF+ GKP
Sbjct: 63 RMRHLKIVRRRFRNGFKEGKP 83
>sp|Q9W1U6|RL372_DROME Probable 60S ribosomal protein L37-B
Length = 89
Score = 123 bits (308), Expect = 1e-28
Identities = 52/79 (65%), Positives = 61/79 (77%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGTTSFGKRHNKTHT CRRCG SS+H+QK C+ C YP K R FNWS KA+GR+ GTG
Sbjct: 3 KGTTSFGKRHNKTHTICRRCGNSSYHLQKSKCSQCGYPAAKTRSFNWSRKAKGRKAQGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSG 238
R +LK++ RRF+NG R G
Sbjct: 63 RMRYLKNLRRRFRNGLREG 81
>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55)
Length = 88
Score = 123 bits (308), Expect = 1e-28
Identities = 52/79 (65%), Positives = 63/79 (79%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP+ K R NW+ KA+ R TTGTG
Sbjct: 3 KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSG 238
R +LK + RRFKNGF++G
Sbjct: 63 RMRYLKHVSRRFKNGFQTG 81
>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55)
Length = 88
Score = 123 bits (308), Expect = 1e-28
Identities = 52/79 (65%), Positives = 62/79 (78%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
KGT SFGKRHNK+HT C RCG+ SFH+QKKTC+SC YP K R +NW KA+ R TTGTG
Sbjct: 3 KGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTG 62
Query: 182 RCLHLKDIHRRFKNGFRSG 238
R +LK + RRFKNGF++G
Sbjct: 63 RMRYLKHVSRRFKNGFQTG 81
>sp|Q9P836|RL37_CANAL 60S ribosomal protein L37
Length = 88
Score = 120 bits (301), Expect = 1e-27
Identities = 51/79 (64%), Positives = 63/79 (79%)
Frame = +2
Query: 2 KGTTSFGKRHNKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTG 181
+GT S GKRHNK+HT C RCG+ SFH+QKKTC+SC YP K+R NW+ KA+ RRTTGTG
Sbjct: 1 EGTPSLGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTG 60
Query: 182 RCLHLKDIHRRFKNGFRSG 238
R +LK + RRFKNGF++G
Sbjct: 61 RMAYLKHVTRRFKNGFQTG 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,949,063
Number of Sequences: 369166
Number of extensions: 574165
Number of successful extensions: 1401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1400
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)