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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00614
         (555 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05877|ENV_HV1MN  Envelope polyprotein GP160 precursor [C...    31   2.3  
sp|Q8F435|UVRA_LEPIN  UvrABC system protein A (UvrA protein)...    29   6.8  

>sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [Contains: Exterior membrane
           glycoprotein (GP120); Transmembrane glycoprotein (GP41)]
          Length = 856

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 297 VDISWI*CSGYNYRDIYSCGCRFIEKLSRLFWNILRNWY 413
           VD+  +    Y++RD+     R +E L R  W +L+ W+
Sbjct: 759 VDLRSLFLFSYHHRDLLLIAARIVELLGRRGWEVLKYWW 797

>sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
 sp|Q72RM8|UVRA_LEPIC UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
          Length = 948

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 311 PADIDSHINAVIKKFLSGRLVK*KLDAPAAIR 216
           PA++  H N++  K+LSGRL   K+  PA +R
Sbjct: 576 PAEVSKHKNSLTGKYLSGRL---KVPIPAKLR 604

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,585,255
Number of Sequences: 369166
Number of extensions: 1087380
Number of successful extensions: 2567
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2567
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_023_B19
2. Dr_sW_009_E18
3. Dr_sW_025_I20
4. Dr_sW_016_F04
5. Dr_sW_003_E12
6. Dr_sW_022_B14
7. Dr_sW_020_M05
8. Dr_sW_006_M16
9. Dr_sW_028_P15
10. Dr_sW_020_D20
11. Dr_sW_024_O11
12. Dr_sW_020_L05
13. Dr_sW_013_D16
14. Dr_sW_023_B13
15. Dr_sW_016_E05
16. Dr_sW_003_K18
17. Dr_sW_021_M10