Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K18
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [C... 32 0.92
sp|P46755|RT04_ACACA Mitochondrial ribosomal protein S4 30 3.5
sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein)... 29 6.0
sp|P70496|PLD1_RAT Phospholipase D1 (PLD 1) (Choline phosph... 29 6.0
sp|P36632|RAD26_SCHPO DNA repair protein rad26 29 7.8
>sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [Contains: Exterior membrane
glycoprotein (GP120); Transmembrane glycoprotein (GP41)]
Length = 856
Score = 32.0 bits (71), Expect = 0.92
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 264 VDISWI*CSGYNYRDIYSCGCRFIEKLSRLFWNILRNWYIHDYIWS 401
VD+ + Y++RD+ R +E L R W +L+ W+ WS
Sbjct: 759 VDLRSLFLFSYHHRDLLLIAARIVELLGRRGWEVLKYWWNLLQYWS 804
>sp|P46755|RT04_ACACA Mitochondrial ribosomal protein S4
Length = 374
Score = 30.0 bits (66), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 414 SINLPLSISSKRIKKYEHSNFLMNKY*FLIKFPFYY 521
S+++PLS+SSKR K F +K L+KF +Y
Sbjct: 88 SLSVPLSLSSKRFKTKRKVFFKTSKIASLLKFNIFY 123
>sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
sp|Q72RM8|UVRA_LEPIC UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
Length = 948
Score = 29.3 bits (64), Expect = 6.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 278 PADIDSHINAVIKKFLSGRLVK*KLDAPAAIR 183
PA++ H N++ K+LSGRL K+ PA +R
Sbjct: 576 PAEVSKHKNSLTGKYLSGRL---KVPIPAKLR 604
>sp|P70496|PLD1_RAT Phospholipase D1 (PLD 1) (Choline phosphatase 1)
(Phosphatidylcholine-hydrolyzing phospholipase D1)
(rPLD1)
Length = 1074
Score = 29.3 bits (64), Expect = 6.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Frame = +3
Query: 369 RNWYIHDYIWSCLTNS-----------INLPLSISSKRIKKYEHSNFLMNKY*FLIKFPF 515
RN I+D ++ CL N IN P+ R++ E + FL++FPF
Sbjct: 993 RNATIYDKVFRCLPNDEVHNLIQLRDFINKPILAKEDRLRAEEELRKIRG---FLVQFPF 1049
Query: 516 YY 521
Y+
Sbjct: 1050 YF 1051
>sp|P36632|RAD26_SCHPO DNA repair protein rad26
Length = 614
Score = 28.9 bits (63), Expect = 7.8
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +3
Query: 420 NLPLSISSKRIKKYEHSNFLMNKY*FLIKFPFYY 521
N+ IS +K+YE SNFL +K+ LI F + Y
Sbjct: 347 NVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLY 380
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,271,362
Number of Sequences: 369166
Number of extensions: 1033841
Number of successful extensions: 2500
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2500
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)