Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_E05
(552 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [C... 32 1.0
sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein)... 29 6.7
>sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [Contains: Exterior membrane
glycoprotein (GP120); Transmembrane glycoprotein (GP41)]
Length = 856
Score = 32.0 bits (71), Expect = 1.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 297 VDISWI*CSGYNYRDIYSCGCRFIEKLSRLFWNILRNWYIHDYIWS 434
VD+ + Y++RD+ R +E L R W +L+ W+ WS
Sbjct: 759 VDLRSLFLFSYHHRDLLLIAARIVELLGRRGWEVLKYWWNLLQYWS 804
>sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
sp|Q72RM8|UVRA_LEPIC UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
Length = 948
Score = 29.3 bits (64), Expect = 6.7
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 311 PADIDSHINAVIKKFLSGRLVK*KLDAPAAIR 216
PA++ H N++ K+LSGRL K+ PA +R
Sbjct: 576 PAEVSKHKNSLTGKYLSGRL---KVPIPAKLR 604
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,471,806
Number of Sequences: 369166
Number of extensions: 1111048
Number of successful extensions: 2744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2744
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)