Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_B19
(510 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03601|NHL1_CAEEL RING finger protein nhl-1 33 0.30
sp|P43788|TRXB_HAEIN Thioredoxin reductase (TRXR) 33 0.51
sp|Q9KSS4|TRXB_VIBCH Thioredoxin reductase (TRXR) 33 0.51
sp|Q9ZCN5|Y688_RICPR Hypothetical protein RP688 30 2.5
sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8... 30 4.3
sp|O33949|CATB2_ACILW Muconate cycloisomerase I 2 (Cis,cis-... 29 5.6
sp|P22155|VE2_HPV57 Regulatory protein E2 29 7.3
sp|Q01222|VB18_VACCV Ankyrin repeat protein B18 29 7.3
sp|P33824|VB18_VARV Ankyrin repeat protein B18 29 7.3
sp|Q8SWH6|Y206_ENCCU Hypothetical protein ECU02_0060 29 7.3
>sp|Q03601|NHL1_CAEEL RING finger protein nhl-1
Length = 974
Score = 33.5 bits (75), Expect = 0.30
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Frame = -2
Query: 224 KIET*CTC--CYQKKSSDKRLPITGYTHRYCYYTIN-----YQENSDCKKCNSKTNVPQR 66
KIE TC C + K LP H +CY + N C +C ++ N+P
Sbjct: 36 KIEQLLTCPICLDRYKQPKLLPCQ---HTFCYPCLESCADTLHRNLKCPECRAEHNIPYD 92
Query: 65 I*KAWIFNYTLFFFVLI 15
KA+ NYTL F+ I
Sbjct: 93 GVKAFQPNYTLTGFLEI 109
>sp|P43788|TRXB_HAEIN Thioredoxin reductase (TRXR)
Length = 318
Score = 32.7 bits (73), Expect = 0.51
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +3
Query: 159 GDWQAFVAGFLLIATGASSFYFTKRPERNF----LITVLICESISAGFKGV-VIGTGIST 323
GD Q F L+IATGAS+ Y E N+ + C+ K V VIG G +
Sbjct: 99 GDVQNFTCDALIIATGASARYIGLPSEENYKGRGVSACATCDGFFYRNKPVGVIGGGNTA 158
Query: 324 VKKAVILKN 350
V++A+ L N
Sbjct: 159 VEEALYLAN 167
>sp|Q9KSS4|TRXB_VIBCH Thioredoxin reductase (TRXR)
Length = 318
Score = 32.7 bits (73), Expect = 0.51
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +3
Query: 153 VTGDWQAFVAGFLLIATGASSFYFTKRPERNFLITVLICESISAGF-----KGVVIGTGI 317
+TGD Q + L+I+TGAS+ Y E F + + GF K V+G G
Sbjct: 97 LTGDSQEYTCDALIISTGASAKYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVVGGGN 156
Query: 318 STVKKAVILKN 350
+ V++A+ L N
Sbjct: 157 TAVEEALYLSN 167
>sp|Q9ZCN5|Y688_RICPR Hypothetical protein RP688
Length = 297
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 270 ESISAGFKGVVIGTGISTVKKAVILKNYPESFGIFLGI-GIYMIIFGAVLFTALICHSIF 446
E +A +K V + + K ++ +Y ++ F I G+ +IIF +LF A I
Sbjct: 25 ECNAAAYKNVCNDSSTKSTSKLALIISYTQNLLSFKNIIGLMLIIFAGILFYAYI----- 79
Query: 447 LQRELKYMNI 476
LQ E +Y+ +
Sbjct: 80 LQHEWQYVTL 89
>sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8 (StARD8) (START
domain-containing protein 8)
Length = 1023
Score = 29.6 bits (65), Expect = 4.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 184 PATNACQSPVTPIDIAIIPLITKKTPTAKNAIPKP 80
PAT++C+S +T + +P+IT P +P P
Sbjct: 61 PATSSCESVLTELSATSLPVITVSLPPEPADLPLP 95
>sp|O33949|CATB2_ACILW Muconate cycloisomerase I 2 (Cis,cis-muconate lactonizing enzyme I
2) (MLE 2)
Length = 385
Score = 29.3 bits (64), Expect = 5.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 242 KLFNNRINMRVDISWI*GSGYRYRDIYS*ESRYIEKLSRIF 364
+LF RI VD++W SG RDI E + K R+F
Sbjct: 128 ELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHRVF 168
>sp|P22155|VE2_HPV57 Regulatory protein E2
Length = 383
Score = 28.9 bits (63), Expect = 7.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 129 GIIAISMGVTGDWQAFVAGFLLIATGAS 212
GI A++ GVTG W+ V G ++ T AS
Sbjct: 174 GIEALTYGVTGTWEVQVGGRVIYHTSAS 201
>sp|Q01222|VB18_VACCV Ankyrin repeat protein B18
Length = 574
Score = 28.9 bits (63), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 179 DKRLPITGYTHRYCYYTINYQENSDCK 99
++R P+TGYT +CY NY N K
Sbjct: 50 NRRQPVTGYTALHCYLYNNYFTNDVLK 76
>sp|P33824|VB18_VARV Ankyrin repeat protein B18
Length = 574
Score = 28.9 bits (63), Expect = 7.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 179 DKRLPITGYTHRYCYYTINYQENSDCK 99
++R P+TGYT +CY NY N K
Sbjct: 50 NRRQPVTGYTALHCYLYNNYFTNDVLK 76
>sp|Q8SWH6|Y206_ENCCU Hypothetical protein ECU02_0060
Length = 602
Score = 28.9 bits (63), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +2
Query: 305 RYRDIYS*ESRYIEK----LSRIFWNILRNWYIHDYIW 406
RYRDI E RY+E+ L ++ W+ + Y+ Y W
Sbjct: 70 RYRDISQEERRYVEEIIKGLPKLVWDSMVWIYVPGYTW 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,228,476
Number of Sequences: 369166
Number of extensions: 1247051
Number of successful extensions: 3157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3151
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)