Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_E12
(480 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [C... 31 1.7
sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein)... 29 4.9
sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8... 28 8.3
>sp|P05877|ENV_HV1MN Envelope polyprotein GP160 precursor [Contains: Exterior membrane
glycoprotein (GP120); Transmembrane glycoprotein (GP41)]
Length = 856
Score = 30.8 bits (68), Expect = 1.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 242 VDISWI*CSGYNYRDIYSCGCRFIEKLSRLFWNILRNWY 358
VD+ + Y++RD+ R +E L R W +L+ W+
Sbjct: 759 VDLRSLFLFSYHHRDLLLIAARIVELLGRRGWEVLKYWW 797
>sp|Q8F435|UVRA_LEPIN UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
sp|Q72RM8|UVRA_LEPIC UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A)
Length = 948
Score = 29.3 bits (64), Expect = 4.9
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -3
Query: 256 PADIDSHINAVIKKFLSGRLVK*KLDAPAAIR 161
PA++ H N++ K+LSGRL K+ PA +R
Sbjct: 576 PAEVSKHKNSLTGKYLSGRL---KVPIPAKLR 604
>sp|Q92502|STAR8_HUMAN StAR-related lipid transfer protein 8 (StARD8) (START
domain-containing protein 8)
Length = 1023
Score = 28.5 bits (62), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 154 PATNACQTPVTPIDIAIIPLITKKTPTAKNAIPKP 50
PAT++C++ +T + +P+IT P +P P
Sbjct: 61 PATSSCESVLTELSATSLPVITVSLPPEPADLPLP 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,820,398
Number of Sequences: 369166
Number of extensions: 936901
Number of successful extensions: 2160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)