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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00529
         (1228 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04833|LRP_CAEEL  Low-density lipoprotein receptor-relate...    32   4.9  
sp|Q9FG72|OPT1_ARATH  Oligopeptide transporter 1 (AtOPT1)          32   4.9  
sp|Q9SUA4|OPT5_ARATH  Oligopeptide transporter 5 (AtOPT5)          32   4.9  

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein precursor (LRP)
          Length = 4753

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = +1

Query: 556  CMSRPVFHLKFYFSSRSFDNVCSKKCTDCPLIRQYFKMEIVNGVHCKVCHCKPLENIKSS 735
            C +     L F   S S  N    KC      RQ F +   N   C+    + +E + SS
Sbjct: 1001 CRASQCTQLCFATPSESHPNELEAKCA----CRQGFMINKENNHSCQKDPAEKIEQLCSS 1056

Query: 736  NRVDQNCKSIRC---ENKCFG 789
            N     CK+ RC   E KC G
Sbjct: 1057 NSTQFQCKNGRCIPKEWKCDG 1077

>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1)
          Length = 755

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 479 FIGDCRIGHFLKII*RNMFIIWL 547
           F+GD ++GH++KI  R+MFI+ L
Sbjct: 528 FVGDFKLGHYMKIPPRSMFIVQL 550

>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5)
          Length = 753

 Score = 31.6 bits (70), Expect = 4.9
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 479 FIGDCRIGHFLKII*RNMFIIWL 547
           F+GD ++GH++KI  R+MFI+ L
Sbjct: 526 FVGDFKLGHYMKIPPRSMFIVQL 548

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,201,394
Number of Sequences: 369166
Number of extensions: 2788574
Number of successful extensions: 6611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6608
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14006577875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_013_M17
2. Dr_sW_024_N14
3. Dr_sW_005_A22
4. Dr_sW_009_F23
5. Dr_sW_005_N16
6. Dr_sW_021_H12
7. Dr_sW_017_A14
8. Dr_sW_013_A08