Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_N14
(722 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Lami... 35 0.16
sp|Q6FKZ2|SLT11_CANGA Pre-mRNA splicing factor SLT11 33 1.0
sp|Q69Z28|ATS16_MOUSE ADAMTS-16 precursor (A disintegrin an... 33 1.0
sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1) 32 2.2
sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5) 32 2.2
sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-relate... 31 3.8
sp|P46530|NOTC1_BRARE Neurogenic locus notch homolog protei... 31 3.8
sp|Q95BX6|MATK_ULMPA Maturase K (Intron maturase) 31 3.8
sp|Q87MY0|MOAA_VIBPA Molybdenum cofactor biosynthesis prote... 30 5.0
sp|Q7MM75|MOAA_VIBVY Molybdenum cofactor biosynthesis prote... 30 5.0
>sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3106
Score = 35.4 bits (80), Expect = 0.16
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Frame = +2
Query: 497 NVCSKKCTDCPLIRQYFKMEIVNGVHCKVCHCKPLENIKSSNRVDQ---NC----KSIRC 655
N +KC++C + + IV G CKVC+C + ++ S V+ +C ++C
Sbjct: 1031 NTTGEKCSEC--LPNTWGHSIVTG--CKVCNCSTVGSLASQCNVNTGQCSCHPKFSGMKC 1086
Query: 656 ENKCSVGNWS--VCSLC 700
++CS G+W+ +C+LC
Sbjct: 1087 -SECSRGHWNYPLCTLC 1102
>sp|Q6FKZ2|SLT11_CANGA Pre-mRNA splicing factor SLT11
Length = 364
Score = 32.7 bits (73), Expect = 1.0
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 467 KFYFSSRSFDNVCSKKCTDCPLIRQYFKM-EIVNGVHCKVCHCK-PLENIKSSNRVDQNC 640
K S +C +KC + +M E+ NG CK+C L + K S+R
Sbjct: 3 KLILGSEEVPQIC-EKCLGTSNTNENIRMNEVPNGAACKICTLPYTLYHFKKSHRSADII 61
Query: 641 KSIRCENKCSVGNWSVCSLCCDD 709
K++ C+ KC++ +VC C D
Sbjct: 62 KTLICK-KCAIQR-NVCQCCMLD 82
>sp|Q69Z28|ATS16_MOUSE ADAMTS-16 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16)
Length = 1222
Score = 32.7 bits (73), Expect = 1.0
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 638 CKSIRCENKCSVGNWSVCSLCC 703
CK C + SVGNWSVCS C
Sbjct: 920 CKVSPCPSSWSVGNWSVCSRTC 941
>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1)
Length = 755
Score = 31.6 bits (70), Expect = 2.2
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 363 FIGDCRIGHFLKII*RNMFIIWL 431
F+GD ++GH++KI R+MFI+ L
Sbjct: 528 FVGDFKLGHYMKIPPRSMFIVQL 550
>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5)
Length = 753
Score = 31.6 bits (70), Expect = 2.2
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 363 FIGDCRIGHFLKII*RNMFIIWL 431
F+GD ++GH++KI R+MFI+ L
Sbjct: 526 FVGDFKLGHYMKIPPRSMFIVQL 548
>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein precursor (LRP)
Length = 4753
Score = 30.8 bits (68), Expect = 3.8
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Frame = +2
Query: 440 CMSRPVFHLKFYFSSRSFDNVCSKKCTDCPLIRQYFKMEIVNGVHCKVCHCKPLENIKSS 619
C + L F S S N KC RQ F + N C+ + +E + SS
Sbjct: 1001 CRASQCTQLCFATPSESHPNELEAKCA----CRQGFMINKENNHSCQKDPAEKIEQLCSS 1056
Query: 620 NRVDQNCKSIRC---ENKCSVGN 679
N CK+ RC E KC N
Sbjct: 1057 NSTQFQCKNGRCIPKEWKCDGEN 1079
>sp|P46530|NOTC1_BRARE Neurogenic locus notch homolog protein 1 precursor
Length = 2437
Score = 30.8 bits (68), Expect = 3.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 563 NGVHCKVCHCKPLENIKSSNRVDQNCKSIRCEN--KCSVGNWSVCSLC 700
N H +C C+P + S Q+C S+RC N C G+ S LC
Sbjct: 1325 NTKHGYICKCQPGYSGSSCEYDSQSCGSLRCRNGATCVSGHLSPRCLC 1372
>sp|Q95BX6|MATK_ULMPA Maturase K (Intron maturase)
Length = 505
Score = 30.8 bits (68), Expect = 3.8
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Frame = -2
Query: 547 EILSNQRTISTFLGTNIIK----RATAKVKFQMENRA*HAHCCSQIMNMF------L*II 398
EI + R +S+ GT I+K R+ + +E++ + + S ++ + L I
Sbjct: 103 EIPFSIRLVSSLKGTEIVKYSNLRSIHSIFPFLEDKFPYLNSVSDVLIPYPIHLEILVQI 162
Query: 397 LRKWPMRQSPMKMCKL----RWNWSRSVVSNFIIPVFVKS----LVFKHRSNKTHTIVLN 242
LR W S + + +L +NW+ ++SN I +F KS +F + S H
Sbjct: 163 LRYWVKDASSLHLLRLFLHDYYNWNSLIISNKSISIFFKSNSRFFLFLYNS---HVCEYE 219
Query: 241 NGNLFFEHMKCFN*LKSS 188
+ LF + C L SS
Sbjct: 220 SILLFIRNQSCHLRLTSS 237
>sp|Q87MY0|MOAA_VIBPA Molybdenum cofactor biosynthesis protein A
Length = 334
Score = 30.4 bits (67), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 458 FHLKFYFSSRSFDNVCSKKCTDC 526
FH KFY+ S +VC+ KCT C
Sbjct: 14 FHRKFYYLRLSVTDVCNFKCTYC 36
>sp|Q7MM75|MOAA_VIBVY Molybdenum cofactor biosynthesis protein A
Length = 334
Score = 30.4 bits (67), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 458 FHLKFYFSSRSFDNVCSKKCTDC 526
FH KFY+ S +VC+ KCT C
Sbjct: 14 FHRKFYYLRLSVTDVCNFKCTYC 36
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,989,153
Number of Sequences: 369166
Number of extensions: 1829130
Number of successful extensions: 4741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4738
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)