Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_N16
(777 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-relate... 32 2.5
sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1) 32 2.5
sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5) 32 2.5
sp|Q9J584|MCEL_FOWPV mRNA capping enzyme large subunit [Inc... 30 5.6
sp|Q87MY0|MOAA_VIBPA Molybdenum cofactor biosynthesis prote... 30 5.6
sp|Q7MM75|MOAA_VIBVY Molybdenum cofactor biosynthesis prote... 30 5.6
sp|Q8D894|MOAA_VIBVU Molybdenum cofactor biosynthesis prote... 30 5.6
sp|P23456|RRPL_HANTV RNA-directed RNA polymerase (L protein) 30 7.4
sp|P28026|WNT8_XENLA Wnt-8 protein precursor (XWnt-8) 30 7.4
sp|P54523|DXS_BACSU 1-deoxy-D-xylulose-5-phosphate synthase... 30 9.6
>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein precursor (LRP)
Length = 4753
Score = 31.6 bits (70), Expect = 2.5
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Frame = +2
Query: 383 CMSRPVFHLKFYFSSRSFDNVCSKKCTDCPLIRQYFKMEIVNGVHCKVCHCKPLENIKSS 562
C + L F S S N KC RQ F + N C+ + +E + SS
Sbjct: 1001 CRASQCTQLCFATPSESHPNELEAKCA----CRQGFMINKENNHSCQKDPAEKIEQLCSS 1056
Query: 563 NRVDQNCKSIRC---ENKCFG 616
N CK+ RC E KC G
Sbjct: 1057 NSTQFQCKNGRCIPKEWKCDG 1077
>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1)
Length = 755
Score = 31.6 bits (70), Expect = 2.5
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 306 FIGDCRIGHFLKII*RNMFIIWL 374
F+GD ++GH++KI R+MFI+ L
Sbjct: 528 FVGDFKLGHYMKIPPRSMFIVQL 550
>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5)
Length = 753
Score = 31.6 bits (70), Expect = 2.5
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 306 FIGDCRIGHFLKII*RNMFIIWL 374
F+GD ++GH++KI R+MFI+ L
Sbjct: 526 FVGDFKLGHYMKIPPRSMFIVQL 548
>sp|Q9J584|MCEL_FOWPV mRNA capping enzyme large subunit [Includes: Polynucleotide
5'-triphosphatase (mRNA 5'-triphosphatase) (TPase); mRNA
guanylyltransferase (GTP--RNA guanylyltransferase)
(GTase)]
Length = 851
Score = 30.4 bits (67), Expect = 5.6
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +2
Query: 5 SAYLELDVQLREEGFGRHKVYESLEVTDDYALINVPKFHLKFGTFQSVKTLHVFKKQ 175
S Y+E ++ ++++ + K+ E L ++ ++ PK+ + + H+ KKQ
Sbjct: 195 SLYIEFEIMMQDKNISKKKLLEELNMSASALFLSHPKYIRLCPSINPILRTHLLKKQ 251
>sp|Q87MY0|MOAA_VIBPA Molybdenum cofactor biosynthesis protein A
Length = 334
Score = 30.4 bits (67), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 401 FHLKFYFSSRSFDNVCSKKCTDC 469
FH KFY+ S +VC+ KCT C
Sbjct: 14 FHRKFYYLRLSVTDVCNFKCTYC 36
>sp|Q7MM75|MOAA_VIBVY Molybdenum cofactor biosynthesis protein A
Length = 334
Score = 30.4 bits (67), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 401 FHLKFYFSSRSFDNVCSKKCTDC 469
FH KFY+ S +VC+ KCT C
Sbjct: 14 FHRKFYYLRLSVTDVCNFKCTYC 36
>sp|Q8D894|MOAA_VIBVU Molybdenum cofactor biosynthesis protein A
Length = 334
Score = 30.4 bits (67), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 401 FHLKFYFSSRSFDNVCSKKCTDC 469
FH KFY+ S +VC+ KCT C
Sbjct: 14 FHRKFYYLRLSVTDVCNFKCTYC 36
>sp|P23456|RRPL_HANTV RNA-directed RNA polymerase (L protein)
Length = 2151
Score = 30.0 bits (66), Expect = 7.4
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 419 FSSRSFDNVCSKKCTDCPLIRQYFKMEIVNGVHCKVCHCKPLENIK 556
+S+ S D + T C ++Y + +NG+HC V K ++ K
Sbjct: 1440 YSATSQDMDLFQTLTSCTFSKEYAWKDFLNGIHCDVIPTKQVQRAK 1485
>sp|P28026|WNT8_XENLA Wnt-8 protein precursor (XWnt-8)
Length = 358
Score = 30.0 bits (66), Expect = 7.4
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 446 CSKKCTDCPLIRQYFKMEIVNGVHCKVCHCKPLENIKSSNRVDQNCKSIRCENKCFGRK 622
C + CTDC L + K EI++ +CK C ++ + CK + ++ C R+
Sbjct: 291 CKRLCTDCGLRVEEKKTEIISSCNCKFHWCCTVK--------CEQCKQVVIKHFCARRE 341
>sp|P54523|DXS_BACSU 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 633
Score = 29.6 bits (65), Expect = 9.6
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +2
Query: 281 PVPSQFTHFHWRLSHRPFSQDYLEKHVHNLAAAMCMS--RPVFHLKFYFSSRSFDNVCSK 454
PV S+ F R F E+H +AAAM M +P + F R++D V
Sbjct: 344 PVGSKLEGFAKEFPDRMFDVGIAEQHAATMAAAMAMQGMKPFLAIYSTFLQRAYDQVVHD 403
Query: 455 KC 460
C
Sbjct: 404 IC 405
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,582,611
Number of Sequences: 369166
Number of extensions: 1869959
Number of successful extensions: 4515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4513
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)