Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_H12
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-relate... 33 0.89
sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1) 32 2.6
sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5) 32 2.6
sp|O98635|MATK_NUPVA Maturase K (Intron maturase) 30 7.5
sp|P54523|DXS_BACSU 1-deoxy-D-xylulose-5-phosphate synthase... 30 9.8
>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein precursor (LRP)
Length = 4753
Score = 33.1 bits (74), Expect = 0.89
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = +2
Query: 119 CMSRPVFHLKFYFSSRSFDNVCSKKCADCPLIRQYFKMEIVNGVHCKVCHCKPLENIKSS 298
C + L F S S N KCA RQ F + N C+ + +E + SS
Sbjct: 1001 CRASQCTQLCFATPSESHPNELEAKCA----CRQGFMINKENNHSCQKDPAEKIEQLCSS 1056
Query: 299 NRVDQNCKSIRC---ENKCFG 352
N CK+ RC E KC G
Sbjct: 1057 NSTQFQCKNGRCIPKEWKCDG 1077
>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1)
Length = 755
Score = 31.6 bits (70), Expect = 2.6
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 42 FIGDCRIGHFLKII*RNMFIIWL 110
F+GD ++GH++KI R+MFI+ L
Sbjct: 528 FVGDFKLGHYMKIPPRSMFIVQL 550
>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5)
Length = 753
Score = 31.6 bits (70), Expect = 2.6
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +3
Query: 42 FIGDCRIGHFLKII*RNMFIIWL 110
F+GD ++GH++KI R+MFI+ L
Sbjct: 526 FVGDFKLGHYMKIPPRSMFIVQL 548
>sp|O98635|MATK_NUPVA Maturase K (Intron maturase)
Length = 505
Score = 30.0 bits (66), Expect = 7.5
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Frame = -1
Query: 506 LEQRVLHHYFVRDVLGK-------LLNYLETSV--APSICLLLVV*RDHHKHNEHNRPIS 354
LE ++ H Y+V D+L LL L T + APS+ LL +HH N P
Sbjct: 139 LEDKLSHLYYVSDILIPHPIHLEILLQTLRTRIRDAPSLHLLRCFLHEHHNWNSLITPKK 198
Query: 353 YRNIYSR 333
+I+S+
Sbjct: 199 STSIFSK 205
>sp|P54523|DXS_BACSU 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 633
Score = 29.6 bits (65), Expect = 9.8
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +2
Query: 17 PVPSQFTHFHWRLSHRPFSQDYLEKHVHNLAAAMCMS--RPVFHLKFYFSSRSFDNVCSK 190
PV S+ F R F E+H +AAAM M +P + F R++D V
Sbjct: 344 PVGSKLEGFAKEFPDRMFDVGIAEQHAATMAAAMAMQGMKPFLAIYSTFLQRAYDQVVHD 403
Query: 191 KC 196
C
Sbjct: 404 IC 405
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,562,754
Number of Sequences: 369166
Number of extensions: 1940687
Number of successful extensions: 4676
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4673
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)