Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M17
(563 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1) 32 1.4
sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5) 32 1.4
sp|P32248|CCR7_HUMAN C-C chemokine receptor type 7 precurso... 29 9.2
>sp|Q9FG72|OPT1_ARATH Oligopeptide transporter 1 (AtOPT1)
Length = 755
Score = 31.6 bits (70), Expect = 1.4
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 479 FIGDCRIGHFLKII*RNMFIIWL 547
F+GD ++GH++KI R+MFI+ L
Sbjct: 528 FVGDFKLGHYMKIPPRSMFIVQL 550
>sp|Q9SUA4|OPT5_ARATH Oligopeptide transporter 5 (AtOPT5)
Length = 753
Score = 31.6 bits (70), Expect = 1.4
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 479 FIGDCRIGHFLKII*RNMFIIWL 547
F+GD ++GH++KI R+MFI+ L
Sbjct: 526 FVGDFKLGHYMKIPPRSMFIVQL 548
>sp|P32248|CCR7_HUMAN C-C chemokine receptor type 7 precursor (C-C CKR-7) (CC-CKR-7)
(CCR-7) (MIP-3 beta receptor) (EBV-induced G-protein
coupled receptor 1) (EBI1) (BLR2) (CD197 antigen)
(CDw197)
Length = 378
Score = 28.9 bits (63), Expect = 9.2
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 250 EVTDDYALINVPKFHLKFGTFQSVKTLHVFKKQITVIQYNGMCFV 384
EVTDDY N + F + S K + FK I Y+ +CFV
Sbjct: 27 EVTDDYIGDNTTVDYTLFESLCSKKDVRNFKAWFLPIMYSIICFV 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,715,358
Number of Sequences: 369166
Number of extensions: 1059065
Number of successful extensions: 2638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2638
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)