Planaria EST Database

DrC_00493

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00493
         (607 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58295|DPOL_METJA  DNA polymerase [Contains: Mja pol-1 in...    34   0.33 
sp|Q8N3Y1|FBXW8_HUMAN  F-box/WD-repeat protein 8 (F-box and ...    30   3.6  
sp|Q08204|SMC5_YEAST  Structural maintenance of chromosome 5       30   4.8  
sp|Q5HEQ1|RECX_STAAC  Regulatory protein recX >gi|27805680|s...    29   8.1  
sp|P66003|RECX_STAAN  Regulatory protein recX >gi|54041803|s...    29   8.1  

>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
          Length = 1634

 Score = 33.9 bits (76), Expect = 0.33
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 367  EILDLVKDLLRLENDPAKLQRISKLLNDLNRKGYSFEKLRKK 492
            +I + + DL+R   D  K   IS++L   N K +SF+K+ KK
Sbjct: 902  KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943

>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
           only protein 29)
          Length = 598

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 362 KRLFTVENIFSGIVCSSVSKRPPTIFVSGNPD 267
           +RL  + N+     C ++S  PP + VSGN D
Sbjct: 423 RRLLKLGNVLRDFTCVNLSDSPPNLMVSGNMD 454

>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
          Length = 1093

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = +1

Query: 283 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPA----KLQRISKLLND 450
           TN   G + + EQ I   I + + +L NE  D    L  L N  +    +L  ++   +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700

Query: 451 LNRKGYSFEKLRKKY 495
           +NR+ +   ++RKKY
Sbjct: 701 INREAHQLNEIRKKY 715

>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
 sp|Q8NVU3|RECX_STAAW Regulatory protein recX
 sp|Q6G861|RECX_STAAS Regulatory protein recX
          Length = 272

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = +1

Query: 304 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRKGYS 471
           ++T+   +    F+  +++L+++L   +DL ++ N   K     + ISK +  L RKGY 
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251

Query: 472 FEKLRKK 492
           ++K++ K
Sbjct: 252 YDKIKAK 258

>sp|P66003|RECX_STAAN Regulatory protein recX
 sp|P66002|RECX_STAAM Regulatory protein recX
 sp|Q6GFI4|RECX_STAAR Regulatory protein recX
          Length = 272

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = +1

Query: 304 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRKGYS 471
           ++T+   +    F+  +++L+++L   +DL ++ N   K     + ISK +  L RKGY 
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251

Query: 472 FEKLRKK 492
           ++K++ K
Sbjct: 252 YDKIKAK 258

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,275,171
Number of Sequences: 369166
Number of extensions: 722113
Number of successful extensions: 2434
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2434
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00493

  1. Dr_sW_024_M01
  2. Dr_sW_022_H24
  3. Dr_sW_018_J17
  4. Dr_sW_014_K07
  5. Dr_sW_013_C02
  6. Dr_sW_013_P11
  7. Dr_sW_015_N03
  8. Dr_sW_017_O07
  9. Dr_sW_018_K13
  10. Dr_sW_013_N09
  11. Dr_sW_018_D09
  12. Dr_sW_015_C02
  13. Dr_sW_023_I10
  14. Dr_sW_025_J17
  15. Dr_sW_025_A05
  16. Dr_sW_019_L07
  17. Dr_sW_017_F04
  18. Dr_sW_025_N10
  19. Dr_sW_025_B13
  20. Dr_sW_026_M13
  21. Dr_sW_021_L11
  22. Dr_sW_016_M02
  23. Dr_sW_028_H24
  24. Dr_sW_019_C13
  25. Dr_sW_028_I08
  26. Dr_sW_020_L16
  27. Dr_sW_021_C21
  28. Dr_sW_023_N03
  29. Dr_sW_028_G16
  30. Dr_sW_026_F22
  31. Dr_sW_015_E20
  32. Dr_sW_025_F11
  33. Dr_sW_001_H16
  34. Dr_sW_008_C20
  35. Dr_sW_013_A04
  36. Dr_sW_026_D15
  37. Dr_sW_007_H20
  38. Dr_sW_004_H06
  39. Dr_sW_026_G18
  40. Dr_sW_008_I01
  41. Dr_sW_005_E07
  42. Dr_sW_010_K11
  43. Dr_sW_006_E05
  44. Dr_sW_004_M23
  45. Dr_sW_003_P18
  46. Dr_sW_005_G18
  47. Dr_sW_006_M05
  48. Dr_sW_011_N14
  49. Dr_sW_007_M03
  50. Dr_sW_003_K09
  51. Dr_sW_008_D16
  52. Dr_sW_003_F08
  53. Dr_sW_002_M05
  54. Dr_sW_011_H02
  55. Dr_sW_011_P04
  56. Dr_sW_004_K15
  57. Dr_sW_009_D17
  58. Dr_sW_026_E19
  59. Dr_sW_019_L23
  60. Dr_sW_023_H21
  61. Dr_sW_008_F11
  62. Dr_sW_006_P04
  63. Dr_sW_010_D07
  64. Dr_sW_003_I13
  65. Dr_sW_008_N08
  66. Dr_sW_027_O17