Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_A04
(438 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.16
sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5 30 2.3
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 30 2.3
sp|Q5HEQ1|RECX_STAAC Regulatory protein recX >gi|27805680|s... 29 3.9
sp|P66003|RECX_STAAN Regulatory protein recX >gi|54041803|s... 29 3.9
sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-... 29 5.1
sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidy... 29 5.1
sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187 29 5.1
sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA lig... 28 6.6
sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor 28 6.6
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 33.9 bits (76), Expect = 0.16
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 201 EILDLVKDLLRLENDPAKLQRISKLLNDLNRKGYSFEKLRKK 326
+I + + DL+R D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
Length = 1093
Score = 30.0 bits (66), Expect = 2.3
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 117 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPA----KLQRISKLLND 284
TN G + + EQ I I + + +L NE D L L N + +L ++ +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700
Query: 285 LNRKGYSFEKLRKKY 329
+NR+ + ++RKKY
Sbjct: 701 INREAHQLNEIRKKY 715
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.0 bits (66), Expect = 2.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 193 RLFTVENIFSGIVCSSVSKRPPTIFVSGNPDSNL 92
RL + N+ C ++S PP + VSGN D +
Sbjct: 424 RLLKLGNVLRDFTCVNLSDSPPNLMVSGNMDGRV 457
>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
sp|Q8NVU3|RECX_STAAW Regulatory protein recX
sp|Q6G861|RECX_STAAS Regulatory protein recX
Length = 272
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 138 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRKGYS 305
++T+ + F+ +++L+++L +DL ++ N K + ISK + L RKGY
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251
Query: 306 FEKLRKK 326
++K++ K
Sbjct: 252 YDKIKAK 258
>sp|P66003|RECX_STAAN Regulatory protein recX
sp|P66002|RECX_STAAM Regulatory protein recX
sp|Q6GFI4|RECX_STAAR Regulatory protein recX
Length = 272
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 138 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRKGYS 305
++T+ + F+ +++L+++L +DL ++ N K + ISK + L RKGY
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251
Query: 306 FEKLRKK 326
++K++ K
Sbjct: 252 YDKIKAK 258
>sp|Q15814|TBCC_HUMAN Tubulin-specific chaperone C (Tubulin-folding cofactor C) (CFC)
Length = 346
Score = 28.9 bits (63), Expect = 5.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 174 FSTVKSLLNEILDLVKDLLRLENDPAKLQRISKLLND 284
F+ ++ + E+L+ + + RLE ++LQ + KL+ND
Sbjct: 64 FARERAAVEELLERAESVERLEEAASRLQGLQKLIND 100
>sp|Q9UTI6|ECT1_SCHPO Probable ethanolamine-phosphate cytidylyltransferase
(Phosphorylethanolamine transferase)
(CTP:phosphoethanolamine cytidylyltransferase)
Length = 365
Score = 28.9 bits (63), Expect = 5.1
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 135 LLDTLEQTIPLNIFSTVKSLLNEILDLVK 221
LLD L ++PL I+ST S+L+ +DL++
Sbjct: 135 LLDRLLSSVPLEIYSTPVSVLSSQIDLLR 163
>sp|O67247|YB87_AQUAE Hypothetical protein AQ_1187
Length = 167
Score = 28.9 bits (63), Expect = 5.1
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +3
Query: 201 EILDLVKDLLRLENDPAKLQRISKLLNDLNRKGYSFEKLRKKY 329
+++++ ++LL++E K Q SK+++ LN GY ++ KY
Sbjct: 25 KLVNIYRELLKVEETLKKGQINSKVIDKLNALGYPIYQIYSKY 67
>sp|P36420|SYV_LACCA Valyl-tRNA synthetase (Valine--tRNA ligase) (ValRS)
Length = 901
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 177 STVKSLLNEILDLVKDLLRLENDPAKL-QRISKLLNDLNRKGY 302
+T+ LNE++DL ++ +L D KL Q I+++ LN +G+
Sbjct: 823 ATIFVPLNELIDLDEEKAKLTKDAKKLEQEIARIDKKLNNQGF 865
>sp|P34521|YM45_CAEEL Hypothetical protein K11H3.5 precursor
Length = 107
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 219 KDLLRLENDPAKLQRISKLL-NDLNRKGYSFEKLRKKY 329
K L LE + A L+++ + L ND+ K EKLR+ Y
Sbjct: 42 KSLQMLEEEQALLEKVVETLSNDIEEKEEKIEKLRRSY 79
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,210,249
Number of Sequences: 369166
Number of extensions: 676910
Number of successful extensions: 2178
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2178
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)