Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_A05
(606 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 31 2.8
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 30 3.6
sp|P51542|CP7A1_RABIT Cytochrome P450 7A1 (Cholesterol 7-al... 30 4.8
sp|Q5HEQ1|RECX_STAAC Regulatory protein recX >gi|27805680|s... 30 6.2
sp|P66003|RECX_STAAN Regulatory protein recX >gi|54041803|s... 30 6.2
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 30.8 bits (68), Expect = 2.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 374 EILDLVKDLLRLENDPAKLQRISKLLNDLNRRGYSFEKLRK 496
+I + + DL+R D K IS++L N + +SF+K+ K
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITK 942
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.4 bits (67), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 369 KRLFTVENIFSGIVCSSVSKRPPTIFVSGNPD 274
+RL + N+ C ++S PP + VSGN D
Sbjct: 423 RRLLKLGNVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|P51542|CP7A1_RABIT Cytochrome P450 7A1 (Cholesterol 7-alpha-monooxygenase) (CYPVII)
(Cholesterol 7-alpha-hydroxylase)
Length = 501
Score = 30.0 bits (66), Expect = 4.8
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 332 IPLNIFSTVKSLLNEILDLVK-DLLRLENDPAKLQRISKLLNDLNRRGYSFEKLRKNISE 508
+P++IF T + ++ + +K D LR + ++L R+ LND + EK + +++
Sbjct: 220 LPIHIFMTAHNAREKLAEGLKHDNLRTRDHISELIRLRMFLNDTLSTFDAMEKAKTHLAI 279
Query: 509 MWISK 523
+W S+
Sbjct: 280 LWASQ 284
>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
sp|Q8NVU3|RECX_STAAW Regulatory protein recX
sp|Q6G861|RECX_STAAS Regulatory protein recX
Length = 272
Score = 29.6 bits (65), Expect = 6.2
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 311 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRRGYS 478
++T+ + F+ +++L+++L +DL ++ N K + ISK + L R+GY
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251
Query: 479 FEKLRKNISEMWIS 520
++K++ + E I+
Sbjct: 252 YDKIKAKLEESGIA 265
>sp|P66003|RECX_STAAN Regulatory protein recX
sp|P66002|RECX_STAAM Regulatory protein recX
sp|Q6GFI4|RECX_STAAR Regulatory protein recX
Length = 272
Score = 29.6 bits (65), Expect = 6.2
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +2
Query: 311 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRRGYS 478
++T+ + F+ +++L+++L +DL ++ N K + ISK + L R+GY
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251
Query: 479 FEKLRKNISEMWIS 520
++K++ + E I+
Sbjct: 252 YDKIKAKLEESGIA 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,644,302
Number of Sequences: 369166
Number of extensions: 832210
Number of successful extensions: 2942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4699949280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)