Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_N10
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09303|YQP2_CAEEL Hypothetical protein F07F6.2 in chromo... 34 0.24
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 33 0.69
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 31 2.0
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 31 2.0
sp|Q8ZG78|YE33_YERPE Hypothetical UPF0268 protein YPO1433/y... 31 2.6
sp|Q8GUQ5|BRI1_LYCES Brassinosteroid LRR receptor kinase pr... 31 2.6
sp|P33203|PRP40_YEAST Pre-mRNA processing protein PRP40 30 3.4
sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5 30 3.4
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 30 3.4
sp|O15455|TLR3_HUMAN Toll-like receptor 3 precursor (CD283 ... 30 4.5
>sp|Q09303|YQP2_CAEEL Hypothetical protein F07F6.2 in chromosome III
Length = 261
Score = 34.3 bits (77), Expect = 0.24
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -2
Query: 546 YIIVILHINFCFTTASRSTSLKYFFLNFSKLY----PLLFKSFNNLLILCNLAGSF 391
YII+I+H F A TS KY ++ +++ LL F NLL+L + G +
Sbjct: 93 YIILIIHFGFEIRNAKSETSRKYIAISTREMFMYYVELLLLYFQNLLLLPYICGGY 148
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 32.7 bits (73), Expect = 0.69
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 353 EILDLVKDLLRLENDPAKLQRISKLLNDLNRRGYSFEKLRKK 478
+I + + DL+R D K IS++L N + +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 290 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKLQRISKLLNDLNRRGYSFEKL 469
LD +EQ N TV+ +L+L KD +LE++ ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 470 RKKYFK 487
R +Y K
Sbjct: 234 RNQYLK 239
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 31.2 bits (69), Expect = 2.0
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 266 LTNIVGGLLDTLEQ--TIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKLQRISKLLNDL 439
LTN + L T+ Q TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733
Query: 440 NRRGYSFEKLRKKYFKDVDL 499
+ EK+R K ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751
>sp|Q8ZG78|YE33_YERPE Hypothetical UPF0268 protein YPO1433/y2737/YP0877
Length = 151
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Frame = +2
Query: 362 DLVKDLLRLENDPAKLQR---ISKLLNDLNRRGYSFEKLRKKYF---------KDVDLEA 505
D V+ L++LEN+P K+Q +N R + RK++F K +DLE
Sbjct: 39 DAVEQLMKLENEPVKVQEWIDAHMNVNLATRMKQTIRARRKRHFNAEHQHTRKKSIDLEF 98
Query: 506 VVKQKL 523
+V Q+L
Sbjct: 99 LVWQRL 104
>sp|Q8GUQ5|BRI1_LYCES Brassinosteroid LRR receptor kinase precursor (tBRI1) (Altered
brassinolide sensitivity 1) (Systemin receptor SR160)
Length = 1207
Score = 30.8 bits (68), Expect = 2.6
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Frame = -2
Query: 567 LSHCFE*YIIVILHINFC----FTTASRSTSLKYFFLNFSKLYPLLFKSFNNLLILCNLA 400
L C ++ I + NF T S+ +++K L+F+K L SF+NLL L L
Sbjct: 348 LGECSSLELVDISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLD 407
Query: 399 GSFSNLN----KSFTKSRI-SFKRLFTVENIFSGIVCSSVS 292
S +NL K + + K L+ N+F G + S+S
Sbjct: 408 MSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLS 448
>sp|P33203|PRP40_YEAST Pre-mRNA processing protein PRP40
Length = 583
Score = 30.4 bits (67), Expect = 3.4
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +2
Query: 332 TVKSLLNEILDLVKDLLRLENDPAKLQRISKLLNDLNRRGYSFEKLRKKYFKDVDLEAVV 511
T + +LNE L +V + END + LN+L R Y+ +++ + FK + E +
Sbjct: 321 THEDVLNEYLKIVNTI---END------LQNKLNELRLRNYTRDRIARDNFKSLLREVPI 371
Query: 512 KQKLM*RMTIIY 547
K K R + IY
Sbjct: 372 KIKANTRWSDIY 383
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
Length = 1093
Score = 30.4 bits (67), Expect = 3.4
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 269 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPA----KLQRISKLLND 436
TN G + + EQ I I + + +L NE D L L N + +L ++ +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700
Query: 437 LNRRGYSFEKLRKKYFKDVDLEAVVKQKL 523
+NR + ++RKKY +++KL
Sbjct: 701 INREAHQLNEIRKKYTMRKSTIETLREKL 729
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.4 bits (67), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 348 KRLFTVENIFSGIVCSSVSKRPPTIFVSGNPD 253
+RL + N+ C ++S PP + VSGN D
Sbjct: 423 RRLLKLGNVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|O15455|TLR3_HUMAN Toll-like receptor 3 precursor (CD283 antigen)
Length = 904
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 486 LKYFFLNFSKLYPLLFKSFNNLLILCNLAGSFSNLNKSFTKSRISFKRLFTVENI-FSGI 310
L+YFFL ++ + L S + L + + NL +SFTK IS L +++ F +
Sbjct: 300 LEYFFLEYNNIQHLFSHSLHGLFNV-----RYLNLKRSFTKQSISLASLPKIDDFSFQWL 354
Query: 309 VC 304
C
Sbjct: 355 KC 356
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,604,229
Number of Sequences: 369166
Number of extensions: 837022
Number of successful extensions: 3026
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3026
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)