Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_L16
(600 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 34 0.32
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 30 3.6
sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5 30 4.7
sp|Q5HEQ1|RECX_STAAC Regulatory protein recX >gi|27805680|s... 29 7.9
sp|P66003|RECX_STAAN Regulatory protein recX >gi|54041803|s... 29 7.9
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 33.9 bits (76), Expect = 0.32
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 363 EILDLVKDLLRLENDPAKLQRISKLLNDLNRKGYSFEKLRKK 488
+I + + DL+R D K IS++L N K +SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.4 bits (67), Expect = 3.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 358 KRLFTVENIFSGIVCSSVSKRPPTIFVSGNPD 263
+RL + N+ C ++S PP + VSGN D
Sbjct: 423 RRLLKLGNVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|Q08204|SMC5_YEAST Structural maintenance of chromosome 5
Length = 1093
Score = 30.0 bits (66), Expect = 4.7
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 279 TNIVGGLLDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPA----KLQRISKLLND 446
TN G + + EQ I I + + +L NE D L L N + +L ++ +D
Sbjct: 643 TNFYQGSIMSNEQKI--RIENEIINLKNEYNDRKSTLDALSNQKSGYRHELSELASKNDD 700
Query: 447 LNRKGYSFEKLRKKY 491
+NR+ + ++RKKY
Sbjct: 701 INREAHQLNEIRKKY 715
>sp|Q5HEQ1|RECX_STAAC Regulatory protein recX
sp|Q8NVU3|RECX_STAAW Regulatory protein recX
sp|Q6G861|RECX_STAAS Regulatory protein recX
Length = 272
Score = 29.3 bits (64), Expect = 7.9
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 300 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRKGYS 467
++T+ + F+ +++L+++L +DL ++ N K + ISK + L RKGY
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251
Query: 468 FEKLRKK 488
++K++ K
Sbjct: 252 YDKIKAK 258
>sp|P66003|RECX_STAAN Regulatory protein recX
sp|P66002|RECX_STAAM Regulatory protein recX
sp|Q6GFI4|RECX_STAAR Regulatory protein recX
Length = 272
Score = 29.3 bits (64), Expect = 7.9
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Frame = +3
Query: 300 LDTLEQTIPLNIFSTVKSLLNEILDLVKDLLRLENDPAKL----QRISKLLNDLNRKGYS 467
++T+ + F+ +++L+++L +DL ++ N K + ISK + L RKGY
Sbjct: 194 METIHAVLNEMDFTQDEAVLDDLLQ--RDLEKIYNKNRKKYTQQKLISKTIEGLMRKGYK 251
Query: 468 FEKLRKK 488
++K++ K
Sbjct: 252 YDKIKAK 258
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,836,508
Number of Sequences: 369166
Number of extensions: 716416
Number of successful extensions: 2405
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2405
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)