Planarian EST Database

DrC_00282

Cluster detail
GO Category :
Consensus Sequence :
>DrC_00282 TAAATTCTTGATTTAAATTTTTGTAAACGACATGGTCCGAGAATTGAAAACTCTAACTGA GTTTAACGAAGTTTTGAAATCAACGGATAAACTGATCGTGGTTGATTTTACTGCCAAATG GTGTGGTCCATGCCAACGCATTGGTCCAGTCTTTGTTTCGTTTAGTCAAGAATTTACCGA TGTTGTTTTTGTTAAAGTAGATGTGGATGAAAATGATGAAACAGCTAAACATTGTGAAAT TTCTGCTATGCCGACATTTCATTTCTATAAAAATGCCCAGCGTATACATGAGTTTTGTGG AGCATCTGATGAAAAACTGAAACAAGCTATAGTTCAATACAAGTGATTTGCCGAATATTT AATATTTATAATATTAGAAACTTCTAATGTTTGATTAATAAATTTTAAGCGTGTTTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00282
         (417 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DGI3|THIO_ICTPU  Thioredoxin                                 104   6e-23
sp|Q98TX1|THIO_OPHHA  Thioredoxin                                  98   6e-21
sp|O96952|THIO_GEOCY  Thioredoxin                                  95   7e-20
sp|P08629|THIO_CHICK  Thioredoxin                                  92   4e-19
sp|P10599|THIO_HUMAN  Thioredoxin (ATL-derived factor) (ADF)...    92   4e-19
sp|O97508|THIO_HORSE  Thioredoxin                                  91   1e-18
sp|P10639|THIO_MOUSE  Thioredoxin (ATL-derived factor) (ADF)       90   2e-18
sp|P08628|THIO_RABIT  Thioredoxin                                  90   2e-18
sp|P29451|THIO_MACMU  Thioredoxin                                  90   2e-18
sp|Q9BDJ3|THIO_CALJA  Thioredoxin                                  90   2e-18

>sp|Q9DGI3|THIO_ICTPU Thioredoxin
          Length = 107

 Score =  104 bits (260), Expect = 6e-23
 Identities = 50/107 (46%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVF--VSFSQEFTXXXXXXXX 202
           MV  ++ L  F+  LK+  DKL+VVDFTA WCGPCQ+IGP+F  +S S+++         
Sbjct: 1   MVVHIENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVD 60

Query: 203 XXENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQYK 343
             +  + + HC+I  MPTFHFYKN Q+I EF GA+++ LKQ I  +K
Sbjct: 61  VDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDHK 107

>sp|Q98TX1|THIO_OPHHA Thioredoxin
          Length = 105

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFN-EVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+ +  LTEF  E+  +  KLIVVDF+A WCGPC+ I P F S  +++           
Sbjct: 1   MVKIVGDLTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 340
           +  + A HC++  MPTF FYKN +++HEF GA+ EKL++AI +Y
Sbjct: 61  DAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104

>sp|O96952|THIO_GEOCY Thioredoxin
          Length = 106

 Score = 94.7 bits (234), Expect = 7e-20
 Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV  LKT  +F++ LK   DKL+V+DFTA WCGPCQRI P +V  ++EF           
Sbjct: 1   MVNFLKTKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFC-GASDEKLKQAIVQYK 343
           ENDETA+  +I AMPTF FYK+ + + ++  GA++  L++ I + K
Sbjct: 61  ENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKNK 106

>sp|P08629|THIO_CHICK Thioredoxin
          Length = 105

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+ +  L +F   LK+  +KL+VVDF+A WCGPC+ I P F S   +F           
Sbjct: 1   MVKSVGNLADFEAELKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 331
           +  + A HC++  MPTF FYKN +++ EF GA+ EKL++ I
Sbjct: 61  DAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101

>sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF) (Surface associated
           sulphydryl protein) (SASP)
          Length = 105

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+++++ T F E L +  DKL+VVDF+A WCGPC+ I P F S S++++          
Sbjct: 1   MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 331
           +  + A  CE+  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>sp|O97508|THIO_HORSE Thioredoxin
          Length = 105

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+++++ + F E L S  +KL+VVDF+A WCGPC+ I P F S S++++          
Sbjct: 1   MVKQIESKSAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 331
           +  + A  CE+  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 61  DCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101

>sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF)
          Length = 105

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+ +++   F E L +  DKL+VVDF+A WCGPC+ I P F S   +++          
Sbjct: 1   MVKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 340
           +  + A  CE+  MPTF FYK  Q++ EF GA+ EKL+ +I +Y
Sbjct: 61  DCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104

>sp|P08628|THIO_RABIT Thioredoxin
          Length = 104

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
 Frame = +2

Query: 35  VRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXE 211
           V+++++ + F EVL S  DKL+VVDF+A WCGPC+ I P F + S++F           +
Sbjct: 1   VKQIESKSAFQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDD 60

Query: 212 NDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 331
             + A  CE+  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 61  CKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 100

>sp|P29451|THIO_MACMU Thioredoxin
          Length = 105

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+++++   F E L    DKL+VVDF+A WCGPC+ I P F S S++++          
Sbjct: 1   MVKQIESKAAFQEALDDAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 331
           +  + A  CE+  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101

>sp|Q9BDJ3|THIO_CALJA Thioredoxin
          Length = 105

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
 Frame = +2

Query: 32  MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 208
           MV+++ +   F E L +  DKL+VVDF+A WCGPC+ I P F S S++++          
Sbjct: 1   MVKQIDSKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD 60

Query: 209 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 340
           +  + A  CE+  MPTF F+K  Q++ EF GA+ EKL+  I ++
Sbjct: 61  DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEF 104

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,244,368
Number of Sequences: 369166
Number of extensions: 710899
Number of successful extensions: 2011
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1963
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00282

Planaria EST Database

DrC_00282

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail