Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C08
(369 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DGI3|THIO_ICTPU Thioredoxin 101 6e-22
sp|Q98TX1|THIO_OPHHA Thioredoxin 96 3e-20
sp|O96952|THIO_GEOCY Thioredoxin 89 3e-18
sp|P08629|THIO_CHICK Thioredoxin 88 5e-18
sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF) 87 2e-17
sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF)... 86 2e-17
sp|P08628|THIO_RABIT Thioredoxin 86 3e-17
sp|Q9BDJ3|THIO_CALJA Thioredoxin 86 3e-17
sp|P11232|THIO_RAT Thioredoxin 85 6e-17
sp|P50413|THIO_SHEEP Thioredoxin 85 6e-17
>sp|Q9DGI3|THIO_ICTPU Thioredoxin
Length = 107
Score = 101 bits (251), Expect = 6e-22
Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
Frame = +2
Query: 5 LTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVF--VSFSQEFTXXXXXXXXXXENDET 175
L F+ LK+ DKL+VVDFTA WCGPCQ+IGP+F +S S+++ + +
Sbjct: 8 LNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADV 67
Query: 176 AKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQYK 295
+ HC+I MPTFHFYKN Q+I EF GA+++ LKQ I +K
Sbjct: 68 SSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDHK 107
>sp|Q98TX1|THIO_OPHHA Thioredoxin
Length = 105
Score = 95.9 bits (237), Expect = 3e-20
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +2
Query: 5 LTEFN-EVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAK 181
LTEF E+ + KLIVVDF+A WCGPC+ I P F S +++ + + A
Sbjct: 8 LTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVAS 67
Query: 182 HCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 292
HC++ MPTF FYKN +++HEF GA+ EKL++AI +Y
Sbjct: 68 HCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104
>sp|O96952|THIO_GEOCY Thioredoxin
Length = 106
Score = 89.0 bits (219), Expect = 3e-18
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 TLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETA 178
T +F++ LK DKL+V+DFTA WCGPCQRI P +V ++EF ENDETA
Sbjct: 7 TKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETA 66
Query: 179 KHCEISAMPTFHFYKNAQRIHEFC-GASDEKLKQAIVQYK 295
+ +I AMPTF FYK+ + + ++ GA++ L++ I + K
Sbjct: 67 EAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKNK 106
>sp|P08629|THIO_CHICK Thioredoxin
Length = 105
Score = 88.2 bits (217), Expect = 5e-18
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = +2
Query: 5 LTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAK 181
L +F LK+ +KL+VVDF+A WCGPC+ I P F S +F + + A
Sbjct: 8 LADFEAELKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVAT 67
Query: 182 HCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 283
HC++ MPTF FYKN +++ EF GA+ EKL++ I
Sbjct: 68 HCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101
>sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF)
Length = 105
Score = 86.7 bits (213), Expect = 2e-17
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +2
Query: 14 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 190
F E L + DKL+VVDF+A WCGPC+ I P F S +++ + + A CE
Sbjct: 11 FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70
Query: 191 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 292
+ MPTF FYK Q++ EF GA+ EKL+ +I +Y
Sbjct: 71 VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF) (Surface associated
sulphydryl protein) (SASP)
Length = 105
Score = 86.3 bits (212), Expect = 2e-17
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Frame = +2
Query: 8 TEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKH 184
T F E L + DKL+VVDF+A WCGPC+ I P F S S++++ + + A
Sbjct: 9 TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASE 68
Query: 185 CEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 283
CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 69 CEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>sp|P08628|THIO_RABIT Thioredoxin
Length = 104
Score = 85.9 bits (211), Expect = 3e-17
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +2
Query: 14 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 190
F EVL S DKL+VVDF+A WCGPC+ I P F + S++F + + A CE
Sbjct: 10 FQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECE 69
Query: 191 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 283
+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 70 VKCMPTFQFFKKGQKVGEFSGANKEKLEATI 100
>sp|Q9BDJ3|THIO_CALJA Thioredoxin
Length = 105
Score = 85.5 bits (210), Expect = 3e-17
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = +2
Query: 14 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 190
F E L + DKL+VVDF+A WCGPC+ I P F S S++++ + + A CE
Sbjct: 11 FQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 70
Query: 191 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 292
+ MPTF F+K Q++ EF GA+ EKL+ I ++
Sbjct: 71 VKCMPTFQFFKKGQKVGEFSGANKEKLEATINEF 104
>sp|P11232|THIO_RAT Thioredoxin
Length = 105
Score = 84.7 bits (208), Expect = 6e-17
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +2
Query: 14 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 190
F E L + DKL+VVDF+A WCGPC+ I P F S +++ + + A CE
Sbjct: 11 FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70
Query: 191 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 292
+ MPTF FYK Q++ EF GA+ EKL+ I ++
Sbjct: 71 VKCMPTFQFYKKGQKVGEFSGANKEKLEATITEF 104
>sp|P50413|THIO_SHEEP Thioredoxin
Length = 105
Score = 84.7 bits (208), Expect = 6e-17
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +2
Query: 14 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 190
F E L S +KL+VVDF+A WCGPC+ I P F S S++++ + + A CE
Sbjct: 11 FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECE 70
Query: 191 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 283
+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 71 VKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,747,228
Number of Sequences: 369166
Number of extensions: 586265
Number of successful extensions: 1782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)