Planarian EST Database


Dr_sW_011_C06

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_011_C06
         (366 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DGI3|THIO_ICTPU  Thioredoxin                                 101   6e-22
sp|Q98TX1|THIO_OPHHA  Thioredoxin                                  96   3e-20
sp|O96952|THIO_GEOCY  Thioredoxin                                  89   3e-18
sp|P08629|THIO_CHICK  Thioredoxin                                  88   5e-18
sp|P10639|THIO_MOUSE  Thioredoxin (ATL-derived factor) (ADF)       87   2e-17
sp|P10599|THIO_HUMAN  Thioredoxin (ATL-derived factor) (ADF)...    86   2e-17
sp|P08628|THIO_RABIT  Thioredoxin                                  86   3e-17
sp|Q9BDJ3|THIO_CALJA  Thioredoxin                                  86   3e-17
sp|P11232|THIO_RAT  Thioredoxin                                    85   6e-17
sp|P50413|THIO_SHEEP  Thioredoxin                                  85   6e-17
>sp|Q9DGI3|THIO_ICTPU Thioredoxin
          Length = 107

 Score =  101 bits (251), Expect = 6e-22
 Identities = 48/100 (48%), Positives = 66/100 (66%), Gaps = 3/100 (3%)
 Frame = +3

Query: 6   LTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVF--VSFSQEFTXXXXXXXXXXENDET 176
           L  F+  LK+  DKL+VVDFTA WCGPCQ+IGP+F  +S S+++           +  + 
Sbjct: 8   LNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADV 67

Query: 177 AKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQYK 296
           + HC+I  MPTFHFYKN Q+I EF GA+++ LKQ I  +K
Sbjct: 68  SSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDHK 107
>sp|Q98TX1|THIO_OPHHA Thioredoxin
          Length = 105

 Score = 95.9 bits (237), Expect = 3e-20
 Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
 Frame = +3

Query: 6   LTEFN-EVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAK 182
           LTEF  E+  +  KLIVVDF+A WCGPC+ I P F S  +++           +  + A 
Sbjct: 8   LTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVAS 67

Query: 183 HCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 293
           HC++  MPTF FYKN +++HEF GA+ EKL++AI +Y
Sbjct: 68  HCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104
>sp|O96952|THIO_GEOCY Thioredoxin
          Length = 106

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 2/100 (2%)
 Frame = +3

Query: 3   TLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETA 179
           T  +F++ LK   DKL+V+DFTA WCGPCQRI P +V  ++EF           ENDETA
Sbjct: 7   TKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETA 66

Query: 180 KHCEISAMPTFHFYKNAQRIHEFC-GASDEKLKQAIVQYK 296
           +  +I AMPTF FYK+ + + ++  GA++  L++ I + K
Sbjct: 67  EAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKNK 106
>sp|P08629|THIO_CHICK Thioredoxin
          Length = 105

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = +3

Query: 6   LTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAK 182
           L +F   LK+  +KL+VVDF+A WCGPC+ I P F S   +F           +  + A 
Sbjct: 8   LADFEAELKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVAT 67

Query: 183 HCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 284
           HC++  MPTF FYKN +++ EF GA+ EKL++ I
Sbjct: 68  HCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101
>sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF)
          Length = 105

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
 Frame = +3

Query: 15  FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 191
           F E L +  DKL+VVDF+A WCGPC+ I P F S   +++          +  + A  CE
Sbjct: 11  FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70

Query: 192 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 293
           +  MPTF FYK  Q++ EF GA+ EKL+ +I +Y
Sbjct: 71  VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF) (Surface associated
           sulphydryl protein) (SASP)
          Length = 105

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
 Frame = +3

Query: 9   TEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKH 185
           T F E L +  DKL+VVDF+A WCGPC+ I P F S S++++          +  + A  
Sbjct: 9   TAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASE 68

Query: 186 CEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 284
           CE+  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 69  CEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>sp|P08628|THIO_RABIT Thioredoxin
          Length = 104

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
 Frame = +3

Query: 15  FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 191
           F EVL S  DKL+VVDF+A WCGPC+ I P F + S++F           +  + A  CE
Sbjct: 10  FQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECE 69

Query: 192 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 284
           +  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 70  VKCMPTFQFFKKGQKVGEFSGANKEKLEATI 100
>sp|Q9BDJ3|THIO_CALJA Thioredoxin
          Length = 105

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
 Frame = +3

Query: 15  FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 191
           F E L +  DKL+VVDF+A WCGPC+ I P F S S++++          +  + A  CE
Sbjct: 11  FQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 70

Query: 192 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 293
           +  MPTF F+K  Q++ EF GA+ EKL+  I ++
Sbjct: 71  VKCMPTFQFFKKGQKVGEFSGANKEKLEATINEF 104
>sp|P11232|THIO_RAT Thioredoxin
          Length = 105

 Score = 84.7 bits (208), Expect = 6e-17
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = +3

Query: 15  FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 191
           F E L +  DKL+VVDF+A WCGPC+ I P F S   +++          +  + A  CE
Sbjct: 11  FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70

Query: 192 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 293
           +  MPTF FYK  Q++ EF GA+ EKL+  I ++
Sbjct: 71  VKCMPTFQFYKKGQKVGEFSGANKEKLEATITEF 104
>sp|P50413|THIO_SHEEP Thioredoxin
          Length = 105

 Score = 84.7 bits (208), Expect = 6e-17
 Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
 Frame = +3

Query: 15  FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 191
           F E L S  +KL+VVDF+A WCGPC+ I P F S S++++          +  + A  CE
Sbjct: 11  FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECE 70

Query: 192 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 284
           +  MPTF F+K  Q++ EF GA+ EKL+  I
Sbjct: 71  VKCMPTFQFFKKGQKVSEFSGANKEKLEATI 101
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,482,887
Number of Sequences: 369166
Number of extensions: 581840
Number of successful extensions: 1768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1721
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)