Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_L07
(372 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DGI3|THIO_ICTPU Thioredoxin 102 3e-22
sp|Q98TX1|THIO_OPHHA Thioredoxin 96 3e-20
sp|O96952|THIO_GEOCY Thioredoxin 92 3e-19
sp|P08629|THIO_CHICK Thioredoxin 88 5e-18
sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF)... 87 1e-17
sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF) 87 2e-17
sp|P08628|THIO_RABIT Thioredoxin 87 2e-17
sp|Q9BDJ3|THIO_CALJA Thioredoxin 86 3e-17
sp|O97508|THIO_HORSE Thioredoxin 86 3e-17
sp|P11232|THIO_RAT Thioredoxin 85 6e-17
>sp|Q9DGI3|THIO_ICTPU Thioredoxin
Length = 107
Score = 102 bits (254), Expect = 3e-22
Identities = 48/103 (46%), Positives = 68/103 (66%), Gaps = 3/103 (2%)
Frame = +3
Query: 3 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVF--VSFSQEFTXXXXXXXXXXEN 173
++ L F+ LK+ DKL+VVDFTA WCGPCQ+IGP+F +S S+++ +
Sbjct: 5 IENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDA 64
Query: 174 DETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQYK 302
+ + HC+I MPTFHFYKN Q+I EF GA+++ LKQ I +K
Sbjct: 65 ADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDHK 107
>sp|Q98TX1|THIO_OPHHA Thioredoxin
Length = 105
Score = 95.9 bits (237), Expect = 3e-20
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 1/97 (1%)
Frame = +3
Query: 12 LTEFN-EVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAK 188
LTEF E+ + KLIVVDF+A WCGPC+ I P F S +++ + + A
Sbjct: 8 LTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVAS 67
Query: 189 HCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 299
HC++ MPTF FYKN +++HEF GA+ EKL++AI +Y
Sbjct: 68 HCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104
>sp|O96952|THIO_GEOCY Thioredoxin
Length = 106
Score = 92.4 bits (228), Expect = 3e-19
Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
Frame = +3
Query: 3 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDE 179
LKT +F++ LK DKL+V+DFTA WCGPCQRI P +V ++EF ENDE
Sbjct: 5 LKTKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDE 64
Query: 180 TAKHCEISAMPTFHFYKNAQRIHEFC-GASDEKLKQAIVQYK 302
TA+ +I AMPTF FYK+ + + ++ GA++ L++ I + K
Sbjct: 65 TAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKNK 106
>sp|P08629|THIO_CHICK Thioredoxin
Length = 105
Score = 88.2 bits (217), Expect = 5e-18
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = +3
Query: 12 LTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAK 188
L +F LK+ +KL+VVDF+A WCGPC+ I P F S +F + + A
Sbjct: 8 LADFEAELKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVAT 67
Query: 189 HCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 290
HC++ MPTF FYKN +++ EF GA+ EKL++ I
Sbjct: 68 HCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101
>sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF) (Surface associated
sulphydryl protein) (SASP)
Length = 105
Score = 87.0 bits (214), Expect = 1e-17
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDE 179
+++ T F E L + DKL+VVDF+A WCGPC+ I P F S S++++ + +
Sbjct: 5 IESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD 64
Query: 180 TAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 290
A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 65 VASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF)
Length = 105
Score = 86.7 bits (213), Expect = 2e-17
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +3
Query: 21 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 197
F E L + DKL+VVDF+A WCGPC+ I P F S +++ + + A CE
Sbjct: 11 FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70
Query: 198 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 299
+ MPTF FYK Q++ EF GA+ EKL+ +I +Y
Sbjct: 71 VKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>sp|P08628|THIO_RABIT Thioredoxin
Length = 104
Score = 86.7 bits (213), Expect = 2e-17
Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDE 179
+++ + F EVL S DKL+VVDF+A WCGPC+ I P F + S++F + +
Sbjct: 4 IESKSAFQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKD 63
Query: 180 TAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 290
A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 64 IAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 100
>sp|Q9BDJ3|THIO_CALJA Thioredoxin
Length = 105
Score = 85.5 bits (210), Expect = 3e-17
Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = +3
Query: 21 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 197
F E L + DKL+VVDF+A WCGPC+ I P F S S++++ + + A CE
Sbjct: 11 FQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECE 70
Query: 198 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 299
+ MPTF F+K Q++ EF GA+ EKL+ I ++
Sbjct: 71 VKCMPTFQFFKKGQKVGEFSGANKEKLEATINEF 104
>sp|O97508|THIO_HORSE Thioredoxin
Length = 105
Score = 85.5 bits (210), Expect = 3e-17
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +3
Query: 3 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDE 179
+++ + F E L S +KL+VVDF+A WCGPC+ I P F S S++++ + +
Sbjct: 5 IESKSAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQD 64
Query: 180 TAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 290
A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 65 VAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101
>sp|P11232|THIO_RAT Thioredoxin
Length = 105
Score = 84.7 bits (208), Expect = 6e-17
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Frame = +3
Query: 21 FNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXENDETAKHCE 197
F E L + DKL+VVDF+A WCGPC+ I P F S +++ + + A CE
Sbjct: 11 FQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCE 70
Query: 198 ISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 299
+ MPTF FYK Q++ EF GA+ EKL+ I ++
Sbjct: 71 VKCMPTFQFYKKGQKVGEFSGANKEKLEATITEF 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,966,901
Number of Sequences: 369166
Number of extensions: 593564
Number of successful extensions: 1805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1758
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)