Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C12
(131 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O96952|THIO_GEOCY Thioredoxin 57 1e-08
sp|Q9DGI3|THIO_ICTPU Thioredoxin 57 2e-08
sp|P22803|TRX2_YEAST Thioredoxin II (TR-II) (Thioredoxin 1) 53 2e-07
sp|P22217|TRX1_YEAST Thioredoxin I (TR-I) (Thioredoxin 2) 50 2e-06
sp|P08628|THIO_RABIT Thioredoxin 49 3e-06
sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF)... 49 3e-06
sp|Q5R9M3|THIO_PONPY Thioredoxin 49 3e-06
sp|Q9UW02|THIO_COPCM Thioredoxin (Allergen Cop c 2) 49 4e-06
sp|Q69AB2|TXND8_MOUSE Thioredoxin domain-containing protein... 49 5e-06
sp|Q6P902|TXND2_MOUSE Thioredoxin domain-containing protein... 49 5e-06
>sp|O96952|THIO_GEOCY Thioredoxin
Length = 106
Score = 57.0 bits (136), Expect = 1e-08
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Frame = +3
Query: 6 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
LKT +F++ LK DKL+V+DFTA WCGPCQRI P +V ++
Sbjct: 5 LKTKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAK 47
>sp|Q9DGI3|THIO_ICTPU Thioredoxin
Length = 107
Score = 56.6 bits (135), Expect = 2e-08
Identities = 24/43 (55%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +3
Query: 6 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
++ L F+ LK+ DKL+VVDFTA WCGPCQ+IGP+F + S+
Sbjct: 5 IENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSK 47
>sp|P22803|TRX2_YEAST Thioredoxin II (TR-II) (Thioredoxin 1)
Length = 104
Score = 53.1 bits (126), Expect = 2e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 3 ELKTLTEFNEVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
+LK+ +E++ L S DKL+VVDF A WCGPC+ I P+ F++
Sbjct: 4 QLKSASEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAE 46
>sp|P22217|TRX1_YEAST Thioredoxin I (TR-I) (Thioredoxin 2)
Length = 103
Score = 49.7 bits (117), Expect = 2e-06
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +3
Query: 3 ELKTLTEFNEVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
+ KT +EF+ + + DKL+VVDF A WCGPC+ I P+ FS+
Sbjct: 4 QFKTASEFDSAI-AQDKLVVVDFYATWCGPCKMIAPMIEKFSE 45
>sp|P08628|THIO_RABIT Thioredoxin
Length = 104
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 ELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
++++ + F EVL S DKL+VVDF+A WCGPC+ I P F + S+
Sbjct: 3 QIESKSAFQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSE 46
>sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF) (Surface associated
sulphydryl protein) (SASP)
Length = 105
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 ELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
++++ T F E L + DKL+VVDF+A WCGPC+ I P F S S+
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSE 47
>sp|Q5R9M3|THIO_PONPY Thioredoxin
Length = 106
Score = 49.3 bits (116), Expect = 3e-06
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 ELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
++++ T F E L + DKL+VVDF+A WCGPC+ I P F S S+
Sbjct: 4 QIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSE 47
>sp|Q9UW02|THIO_COPCM Thioredoxin (Allergen Cop c 2)
Length = 106
Score = 48.9 bits (115), Expect = 4e-06
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +3
Query: 6 LKTLTEFNEVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQ 131
+ L EFN+ L ++ K+I++DF A WCGPC+ I P+F FS+
Sbjct: 5 ISNLDEFNK-LTNSGKIIIIDFWATWCGPCRVISPIFEKFSE 45
>sp|Q69AB2|TXND8_MOUSE Thioredoxin domain-containing protein 8 (Spermatid-specific
thioredoxin-3) (Sptrx-3) (Thioredoxin-6)
Length = 127
Score = 48.5 bits (114), Expect = 5e-06
Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Frame = +3
Query: 6 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFS 128
+K ++E E+ +KL+VV+F+AKWCGPC+ I PVF + S
Sbjct: 5 IKNMSELKELFSDAGNKLVVVEFSAKWCGPCKTIAPVFQAMS 46
>sp|Q6P902|TXND2_MOUSE Thioredoxin domain-containing protein 2 (Spermatid-specific
thioredoxin-1) (Sptrx-1) (Thioredoxin-4)
Length = 515
Score = 48.5 bits (114), Expect = 5e-06
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +3
Query: 6 LKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFS 128
+K EF EVLK +KL+ VDF+A WCGPC+ + P+F S S
Sbjct: 415 IKDKEEFEEVLKDAGEKLVAVDFSAAWCGPCRMMKPLFHSLS 456
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,395,105
Number of Sequences: 369166
Number of extensions: 165773
Number of successful extensions: 863
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 68,354,980
effective HSP length: 17
effective length of database: 65,214,485
effective search space used: 1695576610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)