Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G02
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DGI3|THIO_ICTPU Thioredoxin 104 6e-23
sp|Q98TX1|THIO_OPHHA Thioredoxin 98 6e-21
sp|O96952|THIO_GEOCY Thioredoxin 95 6e-20
sp|P08629|THIO_CHICK Thioredoxin 92 4e-19
sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF)... 92 4e-19
sp|O97508|THIO_HORSE Thioredoxin 91 1e-18
sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF) 90 2e-18
sp|P08628|THIO_RABIT Thioredoxin 90 2e-18
sp|P29451|THIO_MACMU Thioredoxin 90 2e-18
sp|Q9BDJ3|THIO_CALJA Thioredoxin 90 2e-18
>sp|Q9DGI3|THIO_ICTPU Thioredoxin
Length = 107
Score = 104 bits (260), Expect = 6e-23
Identities = 50/107 (46%), Positives = 70/107 (65%), Gaps = 3/107 (2%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVF--VSFSQEFTXXXXXXXX 200
MV ++ L F+ LK+ DKL+VVDFTA WCGPCQ+IGP+F +S S+++
Sbjct: 1 MVVHIENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVD 60
Query: 201 XXENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQYK 341
+ + + HC+I MPTFHFYKN Q+I EF GA+++ LKQ I +K
Sbjct: 61 VDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDHK 107
>sp|Q98TX1|THIO_OPHHA Thioredoxin
Length = 105
Score = 98.2 bits (243), Expect = 6e-21
Identities = 46/104 (44%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = +3
Query: 30 MVRELKTLTEFN-EVLKSTDKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+ + LTEF E+ + KLIVVDF+A WCGPC+ I P F S +++
Sbjct: 1 MVKIVGDLTEFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 338
+ + A HC++ MPTF FYKN +++HEF GA+ EKL++AI +Y
Sbjct: 61 DAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104
>sp|O96952|THIO_GEOCY Thioredoxin
Length = 106
Score = 94.7 bits (234), Expect = 6e-20
Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV LKT +F++ LK DKL+V+DFTA WCGPCQRI P +V ++EF
Sbjct: 1 MVNFLKTKADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFC-GASDEKLKQAIVQYK 341
ENDETA+ +I AMPTF FYK+ + + ++ GA++ L++ I + K
Sbjct: 61 ENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKNK 106
>sp|P08629|THIO_CHICK Thioredoxin
Length = 105
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+ + L +F LK+ +KL+VVDF+A WCGPC+ I P F S +F
Sbjct: 1 MVKSVGNLADFEAELKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 329
+ + A HC++ MPTF FYKN +++ EF GA+ EKL++ I
Sbjct: 61 DAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101
>sp|P10599|THIO_HUMAN Thioredoxin (ATL-derived factor) (ADF) (Surface associated
sulphydryl protein) (SASP)
Length = 105
Score = 92.0 bits (227), Expect = 4e-19
Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+++++ T F E L + DKL+VVDF+A WCGPC+ I P F S S++++
Sbjct: 1 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 329
+ + A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 61 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>sp|O97508|THIO_HORSE Thioredoxin
Length = 105
Score = 90.5 bits (223), Expect = 1e-18
Identities = 41/101 (40%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+++++ + F E L S +KL+VVDF+A WCGPC+ I P F S S++++
Sbjct: 1 MVKQIESKSAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 329
+ + A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 61 DCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATI 101
>sp|P10639|THIO_MOUSE Thioredoxin (ATL-derived factor) (ADF)
Length = 105
Score = 89.7 bits (221), Expect = 2e-18
Identities = 42/104 (40%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+ +++ F E L + DKL+VVDF+A WCGPC+ I P F S +++
Sbjct: 1 MVKLIESKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 338
+ + A CE+ MPTF FYK Q++ EF GA+ EKL+ +I +Y
Sbjct: 61 DCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104
>sp|P08628|THIO_RABIT Thioredoxin
Length = 104
Score = 89.7 bits (221), Expect = 2e-18
Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 1/100 (1%)
Frame = +3
Query: 33 VRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXXE 209
V+++++ + F EVL S DKL+VVDF+A WCGPC+ I P F + S++F +
Sbjct: 1 VKQIESKSAFQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDD 60
Query: 210 NDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 329
+ A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 61 CKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 100
>sp|P29451|THIO_MACMU Thioredoxin
Length = 105
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/101 (40%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+++++ F E L DKL+VVDF+A WCGPC+ I P F S S++++
Sbjct: 1 MVKQIESKAAFQEALDDAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAI 329
+ + A CE+ MPTF F+K Q++ EF GA+ EKL+ I
Sbjct: 61 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATI 101
>sp|Q9BDJ3|THIO_CALJA Thioredoxin
Length = 105
Score = 89.7 bits (221), Expect = 2e-18
Identities = 41/104 (39%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
Frame = +3
Query: 30 MVRELKTLTEFNEVLKST-DKLIVVDFTAKWCGPCQRIGPVFVSFSQEFTXXXXXXXXXX 206
MV+++ + F E L + DKL+VVDF+A WCGPC+ I P F S S++++
Sbjct: 1 MVKQIDSKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD 60
Query: 207 ENDETAKHCEISAMPTFHFYKNAQRIHEFCGASDEKLKQAIVQY 338
+ + A CE+ MPTF F+K Q++ EF GA+ EKL+ I ++
Sbjct: 61 DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEF 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,612,212
Number of Sequences: 369166
Number of extensions: 720460
Number of successful extensions: 2040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1992
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)