Planaria EST Database


DrC_00099

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00099
         (860 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NQ34|CK015_HUMAN  Protein C11orf15 precursor                  58   3e-08
sp|Q9JJR8|CK015_MOUSE  Protein C11orf15 homolog                    57   7e-08
sp|Q9P0T7|TMEM9_HUMAN  Transmembrane protein 9 precursor (De...    53   1e-06
sp|Q9CR23|TMEM9_MOUSE  Transmembrane protein 9 precursor           52   2e-06
sp|O73698|PUT2_FUGRU  Putative protein 2 (PUT2)                    51   5e-06
sp|Q9VNA4|Y1161_DROME  Hypothetical protein CG1161                 37   0.054
sp|P05166|PCCB_HUMAN  Propionyl-CoA carboxylase beta chain, ...    31   5.1  
>sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor
          Length = 198

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 8/239 (3%)
 Frame = +1

Query: 112 ISILFFVVNVKAAYN--EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCRCRYMMPDM 285
           +S+L       AA N  + RCKCIC  P   +N    +  ++ +++  ++C C +++  M
Sbjct: 22  LSVLLLAQLSDAAKNFEDVRCKCIC--PPYKEN----SGHIYNKNISQKDCDCLHVVEPM 75

Query: 286 D------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKKSDT 447
                  E  CLRCECKY+ R +  ++            L +Y+  L  ++ + K++   
Sbjct: 76  PVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLF- 134

Query: 448 NFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQASISEGGD 627
                          G  ++++ +D            D  D  PFA+   + A       
Sbjct: 135 ---------------GHAQLIQSDD------------DIGDHQPFANAHDVLA------- 160

Query: 628 TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDHSILN 804
                                +S + ++V+N+  Y Q RW+  V+ QR  VF  H +L+
Sbjct: 161 ---------------------RSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 198
>sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog
          Length = 199

 Score = 57.0 bits (136), Expect = 7e-08
 Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 8/239 (3%)
 Frame = +1

Query: 112 ISILFFVVNVKAAYN--EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCRCRYMMPDM 285
           +S+L       AA N  + RCKCIC  P   +N   +  K    ++  ++C C +++  M
Sbjct: 23  LSVLLLAQLTGAAKNFEDVRCKCIC--PPYKENPGHIYNK----NISQKDCDCLHVVEPM 76

Query: 286 D------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKKSDT 447
                  E  CLRCECKY+ R +  ++            L +Y+  L  ++ + K++   
Sbjct: 77  PVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLF- 135

Query: 448 NFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQASISEGGD 627
                          G  ++++ +D            D  D  PFA+   + A       
Sbjct: 136 ---------------GHSQLLQSDD------------DVGDHQPFANAHDVLA------- 161

Query: 628 TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDHSILN 804
                                +S + ++V+N+  Y Q RW+  V+ QR  VF  H +L+
Sbjct: 162 ---------------------RSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRHVVLS 199
>sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (Dermal papilla derived protein
           4)
          Length = 183

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 10/247 (4%)
 Frame = +1

Query: 94  MKIIFWISILFFVVNVKAAYN----EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCR 261
           MK++  ++++  ++   A  N    + RCKCIC      +N+S     ++ Q+V  ++C 
Sbjct: 1   MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICP---PYRNISG---HIYNQNVSQKDCN 54

Query: 262 CRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDA 423
           C +++  M       E  CL CEC+Y+ R T  ++            L +Y+  L  +D 
Sbjct: 55  CLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDP 114

Query: 424 VCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQ 603
           + +K                  P A     H           NE +N D     +R    
Sbjct: 115 LIRK------------------PDAYTEQLH-----------NEEENED-----ARSMAA 140

Query: 604 ASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVF 783
           A+ S GG                 PR  T       V+ R    Q RW+  V+ QR  VF
Sbjct: 141 AAASLGG-----------------PRANT-------VLERVEGAQQRWKLQVQEQRKTVF 176

Query: 784 HDHSILN 804
             H +L+
Sbjct: 177 DRHKMLS 183
>sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor
          Length = 183

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 58/247 (23%), Positives = 94/247 (38%), Gaps = 10/247 (4%)
 Frame = +1

Query: 94  MKIIFWISILFFVVNVKAAYN----EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCR 261
           MK++  ++++  ++   A  N    + RCKCIC      +N+S     ++ Q+V  ++C 
Sbjct: 1   MKLLCLVAVVGCLLVPPAQANKSSEDIRCKCICP---PYRNISG---HIYNQNVSQKDCN 54

Query: 262 CRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDA 423
           C +++  M       E  CL CEC+Y+ R T  ++            L +Y+  L  +D 
Sbjct: 55  CLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDP 114

Query: 424 VCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQ 603
           + +K                  P A     H           NE +N D     +R    
Sbjct: 115 LIRK------------------PDAYTEQLH-----------NEEENED-----ARTMAT 140

Query: 604 ASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVF 783
           A+ S GG                 PR  T       V+ R    Q RW+  V+ QR  VF
Sbjct: 141 AAASIGG-----------------PRANT-------VLERVEGAQQRWKLQVQEQRKTVF 176

Query: 784 HDHSILN 804
             H +L+
Sbjct: 177 DRHKMLS 183
>sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2)
          Length = 187

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
 Frame = +1

Query: 91  FMKIIFWISILFFVVNVKA----AYNEYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENC 258
           +M   F +  LF + NV      ++++ RCKCIC      +N+S     ++ ++   ++C
Sbjct: 9   WMLAAFALMTLFLLDNVGVTQAKSFDDVRCKCICP---PYRNISG---HIYNRNFTQKDC 62

Query: 259 RCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFID 420
            C +++  M       E  CL CECKY+ R T  +             L +Y+  L  +D
Sbjct: 63  NCLHVVDPMPVPGNDVEAYCLLCECKYEERSTNTIRVTIIIFLSVVGALLLYMLFLLLVD 122

Query: 421 AVCKK 435
            + +K
Sbjct: 123 PLIRK 127
>sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161
          Length = 227

 Score = 37.4 bits (85), Expect = 0.054
 Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 6/195 (3%)
 Frame = +1

Query: 238 SVDSENCRCR-YMMPDMDEKS-----CLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYL 399
           S  +  C C   ++P +D        C  C+C + +R T +++            L IY+
Sbjct: 92  SSSTTECVCAGALLPRLDANGKELPICAECKCSHVARNTTLIKVVVIIVIWIISILVIYM 151

Query: 400 FVLQFIDAVCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLP 579
             L  +D +  K+   N+    N     + P                           LP
Sbjct: 152 LFLMCLDPLLNKRVKANYQEHTNEDDEPTPP---------------------------LP 184

Query: 580 FASRDQLQASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTV 759
             +  +L A                                 ++V+NR  ++QD+W+  V
Sbjct: 185 AVNNQELSA--------------------------------RANVLNRVGHQQDKWKRQV 212

Query: 760 KMQRDRVFHDHSILN 804
           + QR  ++  H++LN
Sbjct: 213 REQRRHIYDRHTMLN 227
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
           (PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
           ligase beta subunit)
          Length = 539

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
 Frame = +1

Query: 439 SDTNFMIKMNASRSVSSPGAIKIVKHEDKS----------------------NSISMKSN 552
           +D  FM+K  +   ++ P  +K V +ED +                      N +    N
Sbjct: 211 TDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCN 270

Query: 553 EFDNFDDLPFASRDQLQASISEGGDTNFGSITCRKPD-DTVTPRMRTKSEAMSDVVNRAR 729
             D F+ LP +S+D   AS+ E  D +   +    P+ DT+ P   TK+  M D+++   
Sbjct: 271 LRDFFNYLPLSSQD--PASVRECHDPSDRLV----PELDTIVPLESTKAYNMVDIIHSVV 324

Query: 730 YEQD 741
            E++
Sbjct: 325 DERE 328
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,949,610
Number of Sequences: 369166
Number of extensions: 1880691
Number of successful extensions: 4291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4284
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00099

  1. Dr_sW_014_N16
  2. Dr_sW_003_J02
  3. Dr_sW_023_E02
  4. Dr_sW_023_H06
  5. Dr_sW_013_K19
  6. Dr_sW_007_C19