Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J02
(861 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor 56 1e-07
sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog 55 3e-07
sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2) 51 5e-06
sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (De... 50 6e-06
sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor 50 8e-06
sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161 33 1.0
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 31 5.1
>sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor
Length = 198
Score = 55.8 bits (133), Expect = 1e-07
Identities = 51/235 (21%), Positives = 92/235 (39%), Gaps = 8/235 (3%)
Frame = +1
Query: 112 ISILFFVVNVKAAYN--EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCRCRYMMPDM 285
+S+L AA N + RCKCIC P +N + ++ +++ ++C C +++ M
Sbjct: 22 LSVLLLAQLSDAAKNFEDVRCKCIC--PPYKEN----SGHIYNKNISQKDCDCLHVVEPM 75
Query: 286 D------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKKSDT 447
E CLRCECKY+ R + ++ L +Y+ L ++ + K++
Sbjct: 76 PVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLF- 134
Query: 448 NFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQASISEGGD 627
G ++++ +D D D PFA+ + A
Sbjct: 135 ---------------GHAQLIQSDD------------DIGDHQPFANAHDVLA------- 160
Query: 628 TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDH 792
+S + ++V+N+ Y Q RW+ V+ QR VF H
Sbjct: 161 ---------------------RSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRH 194
>sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog
Length = 199
Score = 54.7 bits (130), Expect = 3e-07
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 8/235 (3%)
Frame = +1
Query: 112 ISILFFVVNVKAAYN--EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCRCRYMMPDM 285
+S+L AA N + RCKCIC P +N + K ++ ++C C +++ M
Sbjct: 23 LSVLLLAQLTGAAKNFEDVRCKCIC--PPYKENPGHIYNK----NISQKDCDCLHVVEPM 76
Query: 286 D------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKKSDT 447
E CLRCECKY+ R + ++ L +Y+ L ++ + K++
Sbjct: 77 PVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRRLF- 135
Query: 448 NFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQASISEGGD 627
G ++++ +D D D PFA+ + A
Sbjct: 136 ---------------GHSQLLQSDD------------DVGDHQPFANAHDVLA------- 161
Query: 628 TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDH 792
+S + ++V+N+ Y Q RW+ V+ QR VF H
Sbjct: 162 ---------------------RSRSRANVLNKVEYAQQRWKLQVQEQRKSVFDRH 195
>sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2)
Length = 187
Score = 50.8 bits (120), Expect = 5e-06
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Frame = +1
Query: 91 FMKIIFWISILFFVVNVKA----AYNEYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENC 258
+M F + LF + NV ++++ RCKCIC +N+S ++ ++ ++C
Sbjct: 9 WMLAAFALMTLFLLDNVGVTQAKSFDDVRCKCICP---PYRNISG---HIYNRNFTQKDC 62
Query: 259 RCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFID 420
C +++ M E CL CECKY+ R T + L +Y+ L +D
Sbjct: 63 NCLHVVDPMPVPGNDVEAYCLLCECKYEERSTNTIRVTIIIFLSVVGALLLYMLFLLLVD 122
Query: 421 AVCKK 435
+ +K
Sbjct: 123 PLIRK 127
>sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (Dermal papilla derived protein
4)
Length = 183
Score = 50.4 bits (119), Expect = 6e-06
Identities = 57/243 (23%), Positives = 91/243 (37%), Gaps = 10/243 (4%)
Frame = +1
Query: 94 MKIIFWISILFFVVNVKAAYN----EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCR 261
MK++ ++++ ++ A N + RCKCIC +N+S ++ Q+V ++C
Sbjct: 1 MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICP---PYRNISG---HIYNQNVSQKDCN 54
Query: 262 CRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDA 423
C +++ M E CL CEC+Y+ R T ++ L +Y+ L +D
Sbjct: 55 CLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDP 114
Query: 424 VCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQ 603
+ +K P A H NE +N D +R
Sbjct: 115 LIRK------------------PDAYTEQLH-----------NEEENED-----ARSMAA 140
Query: 604 ASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVF 783
A+ S GG PR T V+ R Q RW+ V+ QR VF
Sbjct: 141 AAASLGG-----------------PRANT-------VLERVEGAQQRWKLQVQEQRKTVF 176
Query: 784 HDH 792
H
Sbjct: 177 DRH 179
>sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor
Length = 183
Score = 50.1 bits (118), Expect = 8e-06
Identities = 57/243 (23%), Positives = 91/243 (37%), Gaps = 10/243 (4%)
Frame = +1
Query: 94 MKIIFWISILFFVVNVKAAYN----EYRCKCICNLPNVSKNVSTLAKKVFIQSVDSENCR 261
MK++ ++++ ++ A N + RCKCIC +N+S ++ Q+V ++C
Sbjct: 1 MKLLCLVAVVGCLLVPPAQANKSSEDIRCKCICP---PYRNISG---HIYNQNVSQKDCN 54
Query: 262 CRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDA 423
C +++ M E CL CEC+Y+ R T ++ L +Y+ L +D
Sbjct: 55 CLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDP 114
Query: 424 VCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQ 603
+ +K P A H NE +N D +R
Sbjct: 115 LIRK------------------PDAYTEQLH-----------NEEENED-----ARTMAT 140
Query: 604 ASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVF 783
A+ S GG PR T V+ R Q RW+ V+ QR VF
Sbjct: 141 AAASIGG-----------------PRANT-------VLERVEGAQQRWKLQVQEQRKTVF 176
Query: 784 HDH 792
H
Sbjct: 177 DRH 179
>sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161
Length = 227
Score = 33.1 bits (74), Expect = 1.0
Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 6/192 (3%)
Frame = +1
Query: 238 SVDSENCRCR-YMMPDMDEKS-----CLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYL 399
S + C C ++P +D C C+C + +R T +++ L IY+
Sbjct: 92 SSSTTECVCAGALLPRLDANGKELPICAECKCSHVARNTTLIKVVVIIVIWIISILVIYM 151
Query: 400 FVLQFIDAVCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLP 579
L +D + K+ N+ N + P LP
Sbjct: 152 LFLMCLDPLLNKRVKANYQEHTNEDDEPTPP---------------------------LP 184
Query: 580 FASRDQLQASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTV 759
+ +L A ++V+NR ++QD+W+ V
Sbjct: 185 AVNNQELSA--------------------------------RANVLNRVGHQQDKWKRQV 212
Query: 760 KMQRDRVFHDHS 795
+ QR ++ H+
Sbjct: 213 REQRRHIYDRHT 224
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 30.8 bits (68), Expect = 5.1
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Frame = +1
Query: 439 SDTNFMIKMNASRSVSSPGAIKIVKHEDKS----------------------NSISMKSN 552
+D FM+K + ++ P +K V +ED + N + N
Sbjct: 211 TDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCN 270
Query: 553 EFDNFDDLPFASRDQLQASISEGGDTNFGSITCRKPD-DTVTPRMRTKSEAMSDVVNRAR 729
D F+ LP +S+D AS+ E D + + P+ DT+ P TK+ M D+++
Sbjct: 271 LRDFFNYLPLSSQD--PASVRECHDPSDRLV----PELDTIVPLESTKAYNMVDIIHSVV 324
Query: 730 YEQD 741
E++
Sbjct: 325 DERE 328
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,514,282
Number of Sequences: 369166
Number of extensions: 1883170
Number of successful extensions: 4221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4215
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)