Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C19
(609 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor 42 0.001
sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog 41 0.003
sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2) 37 0.030
sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (De... 37 0.039
sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor 37 0.051
sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161 33 0.57
sp|Q13418|ILK1_HUMAN Integrin-linked protein kinase 1 (ILK-... 32 0.97
sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, ... 31 2.8
sp|O55222|ILK_MOUSE Integrin-linked protein kinase 31 2.8
sp|P57043|ILK2_HUMAN Integrin-linked protein kinase 2 (ILK-2) 30 3.7
>sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor
Length = 198
Score = 42.0 bits (97), Expect = 0.001
Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 6/186 (3%)
Frame = +2
Query: 2 NCRCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQF 163
+C C +++ M E CLRCECKY+ R + ++ L +Y+ L
Sbjct: 65 DCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTL 124
Query: 164 IDAVCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRD 343
++ + K++ G ++++ +D D D PFA+
Sbjct: 125 VEPILKRRLF----------------GHAQLIQSDD------------DIGDHQPFANAH 156
Query: 344 QLQASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRD 523
+ A +S + ++V+N+ Y Q RW+ V+ QR
Sbjct: 157 DVLA----------------------------RSRSRANVLNKVEYAQQRWKLQVQEQRK 188
Query: 524 RVFHDH 541
VF H
Sbjct: 189 SVFDRH 194
>sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog
Length = 199
Score = 40.8 bits (94), Expect = 0.003
Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 6/186 (3%)
Frame = +2
Query: 2 NCRCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQF 163
+C C +++ M E CLRCECKY+ R + ++ L +Y+ L
Sbjct: 66 DCDCLHVVEPMPVRGPDVEAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTL 125
Query: 164 IDAVCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRD 343
++ + K++ G ++++ +D D D PFA+
Sbjct: 126 VEPILKRRLF----------------GHSQLLQSDD------------DVGDHQPFANAH 157
Query: 344 QLQASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRD 523
+ A +S + ++V+N+ Y Q RW+ V+ QR
Sbjct: 158 DVLA----------------------------RSRSRANVLNKVEYAQQRWKLQVQEQRK 189
Query: 524 RVFHDH 541
VF H
Sbjct: 190 SVFDRH 195
>sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2)
Length = 187
Score = 37.4 bits (85), Expect = 0.030
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +2
Query: 2 NCRCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQF 163
+C C +++ M E CL CECKY+ R T + L +Y+ L
Sbjct: 61 DCNCLHVVDPMPVPGNDVEAYCLLCECKYEERSTNTIRVTIIIFLSVVGALLLYMLFLLL 120
Query: 164 IDAVCKK 184
+D + +K
Sbjct: 121 VDPLIRK 127
>sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (Dermal papilla derived protein
4)
Length = 183
Score = 37.0 bits (84), Expect = 0.039
Identities = 43/186 (23%), Positives = 62/186 (33%), Gaps = 6/186 (3%)
Frame = +2
Query: 2 NCRCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQF 163
+C C +++ M E CL CEC+Y+ R T ++ L +Y+ L
Sbjct: 52 DCNCLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLML 111
Query: 164 IDAVCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRD 343
+D + +K P A H NE +N D +R
Sbjct: 112 VDPLIRK------------------PDAYTEQLH-----------NEEENED-----ARS 137
Query: 344 QLQASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRD 523
A+ S GG PR T V+ R Q RW+ V+ QR
Sbjct: 138 MAAAAASLGG-----------------PRANT-------VLERVEGAQQRWKLQVQEQRK 173
Query: 524 RVFHDH 541
VF H
Sbjct: 174 TVFDRH 179
>sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor
Length = 183
Score = 36.6 bits (83), Expect = 0.051
Identities = 43/186 (23%), Positives = 62/186 (33%), Gaps = 6/186 (3%)
Frame = +2
Query: 2 NCRCRYMMPDMD------EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQF 163
+C C +++ M E CL CEC+Y+ R T ++ L +Y+ L
Sbjct: 52 DCNCLHVVEPMPVPGHDVEAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLML 111
Query: 164 IDAVCKKKSDTNFMIKMNASRSVSSPGAIKIVKHEDKSNSISMKSNEFDNFDDLPFASRD 343
+D + +K P A H NE +N D +R
Sbjct: 112 VDPLIRK------------------PDAYTEQLH-----------NEEENED-----ART 137
Query: 344 QLQASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRD 523
A+ S GG PR T V+ R Q RW+ V+ QR
Sbjct: 138 MATAAASIGG-----------------PRANT-------VLERVEGAQQRWKLQVQEQRK 173
Query: 524 RVFHDH 541
VF H
Sbjct: 174 TVFDRH 179
>sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161
Length = 227
Score = 33.1 bits (74), Expect = 0.57
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +2
Query: 410 DDTVTPRM----RTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDHS 544
DD TP + + A ++V+NR ++QD+W+ V+ QR ++ H+
Sbjct: 176 DDEPTPPLPAVNNQELSARANVLNRVGHQQDKWKRQVREQRRHIYDRHT 224
>sp|Q13418|ILK1_HUMAN Integrin-linked protein kinase 1 (ILK-1) (59 kDa
serine/threonine-protein kinase) (p59ILK)
Length = 452
Score = 32.3 bits (72), Expect = 0.97
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = +2
Query: 329 FASRDQLQASISEGGD-----TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDR 493
F +DQ+ + G +G + K + +R ++E M +NR Y+
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 168
Query: 494 WRGTVKMQ-RDRVFHDHSY*ID*KKSNYFTSFS 589
W+GT + + R+ + HS ID K+ N+ T +
Sbjct: 169 WKGTTRTRPRNGTLNKHSG-IDFKQLNFLTKLN 200
>sp|P05166|PCCB_HUMAN Propionyl-CoA carboxylase beta chain, mitochondrial precursor
(PCCase beta subunit) (Propanoyl-CoA:carbon dioxide
ligase beta subunit)
Length = 539
Score = 30.8 bits (68), Expect = 2.8
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Frame = +2
Query: 188 SDTNFMIKMNASRSVSSPGAIKIVKHEDKS----------------------NSISMKSN 301
+D FM+K + ++ P +K V +ED + N + N
Sbjct: 211 TDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDALCN 270
Query: 302 EFDNFDDLPFASRDQLQASISEGGDTNFGSITCRKPD-DTVTPRMRTKSEAMSDVVNRAR 478
D F+ LP +S+D AS+ E D + + P+ DT+ P TK+ M D+++
Sbjct: 271 LRDFFNYLPLSSQD--PASVRECHDPSDRLV----PELDTIVPLESTKAYNMVDIIHSVV 324
Query: 479 YEQD 490
E++
Sbjct: 325 DERE 328
>sp|O55222|ILK_MOUSE Integrin-linked protein kinase
Length = 452
Score = 30.8 bits (68), Expect = 2.8
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Frame = +2
Query: 251 KIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQASISEGGD-----TNFGSITCRKPDD 415
K+++++ +N+++ N ++ F +DQ+ + G +G + K
Sbjct: 85 KLLQYKADTNAVNEHGNVPLHY--ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Query: 416 TVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQ-RDRVFHDHSY*ID*KKSNYFTSFS 589
+ +R ++E M +NR Y+ W+GT + + R+ + HS ID K+ N+ +
Sbjct: 143 PLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHSG-IDFKQLNFLAKLN 200
>sp|P57043|ILK2_HUMAN Integrin-linked protein kinase 2 (ILK-2)
Length = 452
Score = 30.4 bits (67), Expect = 3.7
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Frame = +2
Query: 329 FASRDQLQASISEGGD-----TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDR 493
F +DQ+ + G +G + K + +R ++E M +NR Y+
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 168
Query: 494 WRGTVKMQ-RDRVFHDHSY*ID*KKSNYFTSFS 589
W+GT + + R+ + HS ID K+ N+ +
Sbjct: 169 WKGTTRTRPRNGTLNKHSG-IDFKQLNFLAKLN 200
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,917,695
Number of Sequences: 369166
Number of extensions: 1339731
Number of successful extensions: 3120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3119
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)