Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_N16
(223 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor 35 0.053
sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog 35 0.053
sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2) 35 0.053
sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (De... 34 0.12
sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor 34 0.12
sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161 30 2.2
sp|P37176|EGLN_PIG Endoglin precursor 29 2.9
sp|P62466|UPPP_PHOPR Undecaprenyl-diphosphatase (Undecapren... 28 8.4
sp|O83705|Y707_TREPA Hypothetical protein TP0707 28 8.4
>sp|Q9NQ34|CK015_HUMAN Protein C11orf15 precursor
Length = 198
Score = 35.0 bits (79), Expect = 0.053
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 18 PDMDEKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKK 179
PD+ E CLRCECKY+ R + ++ L +Y+ L ++ + K++
Sbjct: 80 PDV-EAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRR 132
>sp|Q9JJR8|CK015_MOUSE Protein C11orf15 homolog
Length = 199
Score = 35.0 bits (79), Expect = 0.053
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 18 PDMDEKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKK 179
PD+ E CLRCECKY+ R + ++ L +Y+ L ++ + K++
Sbjct: 81 PDV-EAYCLRCECKYEERSSVTIKVTIIIYLSILGLLLLYMVYLTLVEPILKRR 133
>sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2)
Length = 187
Score = 35.0 bits (79), Expect = 0.053
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 30 EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKK 176
E CL CECKY+ R T + L +Y+ L +D + +K
Sbjct: 79 EAYCLLCECKYEERSTNTIRVTIIIFLSVVGALLLYMLFLLLVDPLIRK 127
>sp|Q9P0T7|TMEM9_HUMAN Transmembrane protein 9 precursor (Dermal papilla derived protein
4)
Length = 183
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 30 EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKK 176
E CL CEC+Y+ R T ++ L +Y+ L +D + +K
Sbjct: 70 EAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK 118
>sp|Q9CR23|TMEM9_MOUSE Transmembrane protein 9 precursor
Length = 183
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 30 EKSCLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKK 176
E CL CEC+Y+ R T ++ L +Y+ L +D + +K
Sbjct: 70 EAYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRK 118
>sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161
Length = 227
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +3
Query: 39 CLRCECKYQSRKTKIMEXXXXXXXXXXXGLTIYLFVLQFIDAVCKKKSDTNFMIKMN 209
C C+C + +R T +++ L IY+ L +D + K+ N+ N
Sbjct: 118 CAECKCSHVARNTTLIKVVVIIVIWIISILVIYMLFLMCLDPLLNKRVKANYQEHTN 174
>sp|P37176|EGLN_PIG Endoglin precursor
Length = 653
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 142 NKYIVKPDIIDMTIHT-TTSIILVFLLWYLHSHRRH 38
+K +V P ++ +T +L LWY+HSH RH
Sbjct: 579 DKGLVLPAVLGITFGAFLIGALLTAALWYIHSHTRH 614
>sp|P62466|UPPP_PHOPR Undecaprenyl-diphosphatase (Undecaprenyl pyrophosphate phosphatase)
(Bacitracin resistance protein)
Length = 267
Score = 27.7 bits (60), Expect = 8.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 94 TTSIILVFLLWYLHSHRRHDF 32
TT+II LLW++ H H F
Sbjct: 119 TTTIIFAILLWWVDKHSEHKF 139
>sp|O83705|Y707_TREPA Hypothetical protein TP0707
Length = 159
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 79 LVFLLWYLHSHRRHDFSSISGIIY 8
LV+ LW L HR FS +SG++Y
Sbjct: 77 LVYPLWALAVHRPRVFSVLSGLLY 100
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,223,432
Number of Sequences: 369166
Number of extensions: 454641
Number of successful extensions: 1059
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 68,354,980
effective HSP length: 45
effective length of database: 60,041,905
effective search space used: 1681173340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)