Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K19
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161 37 0.015
sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein) 30 1.8
sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2) 29 5.2
sp|O55222|ILK_MOUSE Integrin-linked protein kinase 29 5.2
sp|Q13418|ILK1_HUMAN Integrin-linked protein kinase 1 (ILK-... 28 6.8
sp|P57043|ILK2_HUMAN Integrin-linked protein kinase 2 (ILK-2) 28 6.8
sp|P57044|ILK_CAVPO Integrin-linked protein kinase (Beta-in... 28 6.8
sp|P45169|POTC_HAEIN Spermidine/putrescine transport system... 28 6.8
sp|Q19529|CMC3_CAEEL Probable calcium-binding mitochondrial... 28 8.8
sp|Q5HCU5|MQO2_STAAC Probable malate:quinone oxidoreductase... 28 8.8
>sp|Q9VNA4|Y1161_DROME Hypothetical protein CG1161
Length = 227
Score = 37.4 bits (85), Expect = 0.015
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +3
Query: 243 DDTVTPRM----RTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDHSILN 386
DD TP + + A ++V+NR ++QD+W+ V+ QR ++ H++LN
Sbjct: 176 DDEPTPPLPAVNNQELSARANVLNRVGHQQDKWKRQVREQRRHIYDRHTMLN 227
>sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein)
Length = 4910
Score = 30.4 bits (67), Expect = 1.8
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Frame = +3
Query: 42 YKFYDKNETDRLAFKIVKHEDKSNSISMKSNEF---DNFDDLPFASRDQLQASISEGGDT 212
+KF D ++ F+ + + + ++ + +N DD+ F D + + D
Sbjct: 3165 FKFNDNSDDYEADFRKLFPDYEDTALVTNEKDISSPENLDDIYFKLADTYISVFDKDHDA 3224
Query: 213 NFGS-------ITCRKPDDTVTPRMRT-KSEAMSDVVNRARYEQDRWRGTVKMQRDRVFH 368
NF S IT +D R+ KS ++S V+N E ++ T +H
Sbjct: 3225 NFSSELKSGAIITTILSEDLKNTRIEELKSGSLSAVINTLDAETQSFKNTEVFGNIDFYH 3284
Query: 369 DHSI 380
D SI
Sbjct: 3285 DFSI 3288
>sp|O73698|PUT2_FUGRU Putative protein 2 (PUT2)
Length = 187
Score = 28.9 bits (63), Expect = 5.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 246 DTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQRDRVFHDHSIL 383
+ + P+M + V+ R Q RW+ V+ QR VF H +L
Sbjct: 142 EDIQPQMSGDPARGNTVLERVEGAQQRWKKQVQEQRKTVFDRHKML 187
>sp|O55222|ILK_MOUSE Integrin-linked protein kinase
Length = 452
Score = 28.9 bits (63), Expect = 5.2
Identities = 21/104 (20%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Frame = +3
Query: 84 KIVKHEDKSNSISMKSNEFDNFDDLPFASRDQLQASISEGGD-----TNFGSITCRKPDD 248
K+++++ +N+++ N ++ F +DQ+ + G +G + K
Sbjct: 85 KLLQYKADTNAVNEHGNVPLHY--ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Query: 249 TVTPRMRTKSEAMSDVVNRARYEQDRWRGTVKMQ-RDRVFHDHS 377
+ +R ++E M +NR Y+ W+GT + + R+ + HS
Sbjct: 143 PLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNGTLNKHS 186
>sp|Q13418|ILK1_HUMAN Integrin-linked protein kinase 1 (ILK-1) (59 kDa
serine/threonine-protein kinase) (p59ILK)
Length = 452
Score = 28.5 bits (62), Expect = 6.8
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 162 FASRDQLQASISEGGD-----TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDR 326
F +DQ+ + G +G + K + +R ++E M +NR Y+
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 168
Query: 327 WRGTVKMQ-RDRVFHDHS 377
W+GT + + R+ + HS
Sbjct: 169 WKGTTRTRPRNGTLNKHS 186
>sp|P57043|ILK2_HUMAN Integrin-linked protein kinase 2 (ILK-2)
Length = 452
Score = 28.5 bits (62), Expect = 6.8
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 162 FASRDQLQASISEGGD-----TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDR 326
F +DQ+ + G +G + K + +R ++E M +NR Y+
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 168
Query: 327 WRGTVKMQ-RDRVFHDHS 377
W+GT + + R+ + HS
Sbjct: 169 WKGTTRTRPRNGTLNKHS 186
>sp|P57044|ILK_CAVPO Integrin-linked protein kinase (Beta-integrin-linked kinase)
Length = 451
Score = 28.5 bits (62), Expect = 6.8
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = +3
Query: 162 FASRDQLQASISEGGD-----TNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDR 326
F +DQ+ + G +G + K + +R ++E M +NR Y+
Sbjct: 109 FWGQDQVAEDLVANGALVSICNKYGEMPMDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 168
Query: 327 WRGTVKMQ-RDRVFHDHS 377
W+GT + + R+ + HS
Sbjct: 169 WKGTTRTRPRNGTLNKHS 186
>sp|P45169|POTC_HAEIN Spermidine/putrescine transport system permease protein potC
Length = 257
Score = 28.5 bits (62), Expect = 6.8
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 329 PSILLVTGSIYNIRHGL*FSTHSWRYCIIWFSTCYTTEICI-SSFTDTRL*LITRSEWQV 153
P I+LVT S R+GL + SW W+ + + I ++ + + +
Sbjct: 21 PIIILVTNSFNKDRYGLSWKGFSWN----WYERLFNNDTLIQAAIHSVTIAFFAATLATI 76
Query: 152 IKIIKFIGLHRYRIR 108
+ + I L+RYR R
Sbjct: 77 VGGLTAIALYRYRFR 91
>sp|Q19529|CMC3_CAEEL Probable calcium-binding mitochondrial carrier F17E5.2
Length = 531
Score = 28.1 bits (61), Expect = 8.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 60 NETDRLAFKIVKHEDKSNSISMKSNEFDNF 149
N D+ A IVK D+S S S+ NEF +F
Sbjct: 171 NLDDQKAMSIVKKMDQSGSSSVNLNEFQDF 200
>sp|Q5HCU5|MQO2_STAAC Probable malate:quinone oxidoreductase 2 (Malate dehydrogenase
[acceptor] 2) (MQO 2)
sp|P99115|MQO2_STAAN Probable malate:quinone oxidoreductase 2 (Malate dehydrogenase
[acceptor] 2) (MQO 2)
sp|P65424|MQO2_STAAM Probable malate:quinone oxidoreductase 2 (Malate dehydrogenase
[acceptor] 2) (MQO 2)
sp|Q6GDJ6|MQO2_STAAR Probable malate:quinone oxidoreductase 2 (Malate dehydrogenase
[acceptor] 2) (MQO 2)
sp|Q6G669|MQO2_STAAS Probable malate:quinone oxidoreductase 2 (Malate dehydrogenase
[acceptor] 2) (MQO 2)
Length = 498
Score = 28.1 bits (61), Expect = 8.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +3
Query: 186 ASISEGGDTNFGSITCRKPDDTVTPRMRTKSEAMSDVVNRARYEQDRWRGTVK 344
+ I EG D NFG +T RK ++ + +VV+ + +W TVK
Sbjct: 174 SKIDEGTDVNFGELT-RKMAKSIEAHPNATVQFNHEVVDFEQLSNGQWEVTVK 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,255,123
Number of Sequences: 369166
Number of extensions: 805324
Number of successful extensions: 2000
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)