Planarian EST Database

DrC_01108

Cluster detail
GO Category :
Consensus Sequence :
>DrC_01108 ATCTAATTTATTTATTAGTTCTAATCGAGTTTATGTAACTCCATCATGTTTTAAACATAC TTTACCTGATTTACCCTATGACTATAATGCGTTAGAGCCTTCAATTTCTGCTGACATAAT GGAAGTGCATCACAAAAAACATCACGCTGCATATGTTAATAATCTCAATAGCGCTCTAGA GCAACTTGACGAAGCTGTTCATAAAAATGATGTTAACAAGATTATTTCTATGCAGAACGC CATAAAATTCAACGGTGGAGGACATTTAAATCATTCAATATTTTGGAAGAATTTGTGTCC CAAAGGTGGCGGAGAACCTGATGGCTCTTTATTGGCTGCGTTGCAGCGGGAATTTGGTTC GTTTGAGAACTTTAAAACTGAGTTATCAGCGGCTGCTGTCGGAATCCAGGGTTCTGGATG GGCATGGTTGGGATTAAATAAAAAAAATGGCCGATTACACATCACAACTTGTGGTAATCA AGACCCTCTGGAAGCAACAACGGGTCTCAAACCGCTTTTGGGATTCGATGTTTGGGAGCA TGCTTATTATCTCCAATACAAAAATGTTCGTCCAGATTACGTGAAGGCATTATGGCGAAT TATTAATTGGGGCGATGTAGCTCACAGATTTTCCGAAGGTGTTGAAGGAACTCATAAATA AATAAACCAATTGCTTAATTTTTTCTAGAATTATAACGTTGCGTTGTGTTT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01108
         (711 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09671|SODM_MOUSE  Superoxide dismutase [Mn], mitochondri...   298   1e-80
sp|P07895|SODM_RAT  Superoxide dismutase [Mn], mitochondrial...   296   4e-80
sp|P41976|SODM_BOVIN  Superoxide dismutase [Mn], mitochondri...   295   6e-80
sp|Q8HXP4|SODM_MACFU  Superoxide dismutase [Mn], mitochondri...   295   6e-80
sp|Q8HXP6|SODM_PONPY  Superoxide dismutase [Mn], mitochondri...   294   2e-79
sp|P04179|SODM_HUMAN  Superoxide dismutase [Mn], mitochondri...   294   2e-79
sp|Q8HXP7|SODM_PANTR  Superoxide dismutase [Mn], mitochondrial    294   2e-79
sp|Q8HXP1|SODM_CEBAP  Superoxide dismutase [Mn], mitochondri...   294   2e-79
sp|Q5FB30|SODM_MACNE  Superoxide dismutase [Mn], mitochondri...   293   2e-79
sp|Q8HXP5|SODM_HYLLA  Superoxide dismutase [Mn], mitochondrial    292   5e-79

>sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondrial precursor
          Length = 222

 Score =  298 bits (762), Expect = 1e-80
 Identities = 130/194 (67%), Positives = 158/194 (81%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN+  E+  EA+ K DV   +++
Sbjct: 25  KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVAL 84

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NH+IFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QG
Sbjct: 85  QPALKFNGGGHINHTIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQG 144

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ GRL I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 145 SGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 204

Query: 593 WRIINWGDVAHRFS 634
           W +INW +V  R++
Sbjct: 205 WNVINWENVTERYT 218

>sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial precursor
          Length = 222

 Score =  296 bits (758), Expect = 4e-80
 Identities = 130/193 (67%), Positives = 156/193 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHA YVNNLN   E+  EA+ K DV   +++
Sbjct: 25  KHSLPDLPYDYGALEPHINAQIMQLHHSKHHATYVNNLNVTEEKYHEALAKGDVTTQVAL 84

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QG
Sbjct: 85  QPALKFNGGGHINHSIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQG 144

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ GRL I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 145 SGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 204

Query: 593 WRIINWGDVAHRF 631
           W +INW +V+ R+
Sbjct: 205 WNVINWENVSQRY 217

>sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondrial precursor
          Length = 222

 Score =  295 bits (756), Expect = 6e-80
 Identities = 131/194 (67%), Positives = 156/194 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN A E+  EA+ K DV   I++
Sbjct: 25  KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVAEEKYREALEKGDVTAQIAL 84

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF  FK +L+A +VG+QG
Sbjct: 85  QPALKFNGGGHINHSIFWTNLSPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVGVQG 144

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ GRL I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 145 SGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 204

Query: 593 WRIINWGDVAHRFS 634
           W +INW +V  R++
Sbjct: 205 WNVINWENVTARYT 218

>sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondrial
 sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial
 sp|Q8HXP2|SODM_MACMU Superoxide dismutase [Mn], mitochondrial
          Length = 198

 Score =  295 bits (756), Expect = 6e-80
 Identities = 131/193 (67%), Positives = 156/193 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 1   KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 60

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSFE FK +L+AA+VG+QG
Sbjct: 61  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQG 120

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G+L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 121 SGWGWLGFNKERGQLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 180

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 181 WNVINWENVTERY 193

>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial precursor
          Length = 222

 Score =  294 bits (752), Expect = 2e-79
 Identities = 130/193 (67%), Positives = 155/193 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 25  KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 84

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QG
Sbjct: 85  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQG 144

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 145 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 204

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 205 WNVINWENVTERY 217

>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial precursor
          Length = 222

 Score =  294 bits (752), Expect = 2e-79
 Identities = 130/193 (67%), Positives = 155/193 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 25  KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 84

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QG
Sbjct: 85  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQG 144

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 145 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 204

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 205 WNVINWENVTERY 217

>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial
          Length = 198

 Score =  294 bits (752), Expect = 2e-79
 Identities = 130/193 (67%), Positives = 155/193 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 1   KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 60

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QG
Sbjct: 61  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQG 120

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 121 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 180

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 181 WNVINWENVTERY 193

>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial
 sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial
          Length = 198

 Score =  294 bits (752), Expect = 2e-79
 Identities = 130/193 (67%), Positives = 154/193 (79%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 1   KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIAL 60

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK  L+AA+VG+QG
Sbjct: 61  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQG 120

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 121 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 180

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 181 WNVINWENVTERY 193

>sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondrial precursor
          Length = 222

 Score =  293 bits (751), Expect = 2e-79
 Identities = 130/193 (67%), Positives = 156/193 (80%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 25  KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 84

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSFE +K +L+AA+VG+QG
Sbjct: 85  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQG 144

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G+L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 145 SGWGWLGFNKERGQLQIAACLNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 204

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 205 WNVINWENVTERY 217

>sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial
          Length = 198

 Score =  292 bits (748), Expect = 5e-79
 Identities = 129/193 (66%), Positives = 154/193 (79%)
 Frame = +2

Query: 53  KHTLPDLPYDYNALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISM 232
           KH+LPDLPYDY ALEP I+A IM++HH KHHAAYVNNLN   E+  EA+ K DV   I++
Sbjct: 1   KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIAL 60

Query: 233 QNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQG 412
           Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+A +VG+QG
Sbjct: 61  QPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVGVQG 120

Query: 413 SGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKAL 592
           SGW WLG NK+ G L I  C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+
Sbjct: 121 SGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAI 180

Query: 593 WRIINWGDVAHRF 631
           W +INW +V  R+
Sbjct: 181 WNVINWENVTERY 193

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,774,658
Number of Sequences: 369166
Number of extensions: 2004842
Number of successful extensions: 5713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5359
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01108

Planaria EST Database

DrC_01108

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail