Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_J18
(597 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondri... 263 2e-70
sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial... 261 7e-70
sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondri... 261 1e-69
sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondri... 261 1e-69
sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondri... 259 4e-69
sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondri... 259 4e-69
sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial 259 4e-69
sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondri... 259 4e-69
sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondri... 259 5e-69
sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial 258 1e-68
>sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 263 bits (672), Expect = 2e-70
Identities = 114/173 (65%), Positives = 140/173 (80%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN+ E+ EA+ K DV +++Q A+KFNGGGH+NH+IFW NL
Sbjct: 46 IMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVALQPALKFNGGGHINHTIFWTNL 105
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QGSGW WLG NK+ GRL I C
Sbjct: 106 SPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACS 165
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRFS 523
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R++
Sbjct: 166 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYT 218
>sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 261 bits (668), Expect = 7e-70
Identities = 114/172 (66%), Positives = 138/172 (80%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHA YVNNLN E+ EA+ K DV +++Q A+KFNGGGH+NHSIFW NL
Sbjct: 46 IMQLHHSKHHATYVNNLNVTEEKYHEALAKGDVTTQVALQPALKFNGGGHINHSIFWTNL 105
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QGSGW WLG NK+ GRL I C
Sbjct: 106 SPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACS 165
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V+ R+
Sbjct: 166 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSQRY 217
>sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 261 bits (666), Expect = 1e-69
Identities = 115/173 (66%), Positives = 138/173 (79%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN A E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 46 IMQLHHSKHHAAYVNNLNVAEEKYREALEKGDVTAQIALQPALKFNGGGHINHSIFWTNL 105
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSF FK +L+A +VG+QGSGW WLG NK+ GRL I C
Sbjct: 106 SPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACS 165
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRFS 523
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R++
Sbjct: 166 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTARYT 218
>sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP2|SODM_MACMU Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 261 bits (666), Expect = 1e-69
Identities = 115/172 (66%), Positives = 138/172 (80%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 22 IMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 81
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSFE FK +L+AA+VG+QGSGW WLG NK+ G+L I C
Sbjct: 82 SPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACP 141
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 142 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 259 bits (662), Expect = 4e-69
Identities = 114/172 (66%), Positives = 137/172 (79%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 46 IMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 105
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+ G L I C
Sbjct: 106 SPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACP 165
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 166 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 259 bits (662), Expect = 4e-69
Identities = 114/172 (66%), Positives = 137/172 (79%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 46 IMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 105
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+ G L I C
Sbjct: 106 SPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACP 165
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 166 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 259 bits (662), Expect = 4e-69
Identities = 114/172 (66%), Positives = 137/172 (79%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 22 IMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 81
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+ G L I C
Sbjct: 82 SPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACP 141
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 142 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 259 bits (662), Expect = 4e-69
Identities = 114/172 (66%), Positives = 136/172 (79%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 22 IMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 81
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSF+ FK L+AA+VG+QGSGW WLG NK+ G L I C
Sbjct: 82 SPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACP 141
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 142 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
>sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 259 bits (661), Expect = 5e-69
Identities = 114/172 (66%), Positives = 138/172 (80%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 46 IMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 105
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSFE +K +L+AA+VG+QGSGW WLG NK+ G+L I C
Sbjct: 106 SPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACL 165
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 166 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
>sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 258 bits (658), Expect = 1e-68
Identities = 113/172 (65%), Positives = 136/172 (79%)
Frame = +2
Query: 5 IMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNL 184
IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL
Sbjct: 22 IMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNL 81
Query: 185 CPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCG 364
P GGGEP G LL A++R+FGSF+ FK +L+A +VG+QGSGW WLG NK+ G L I C
Sbjct: 82 SPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACP 141
Query: 365 NQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 520
NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 142 NQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,823,280
Number of Sequences: 369166
Number of extensions: 1795488
Number of successful extensions: 5104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4756
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)