Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K16
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondri... 252 4e-67
sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial... 251 1e-66
sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondri... 250 2e-66
sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondri... 250 2e-66
sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondri... 248 6e-66
sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondri... 248 6e-66
sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial 248 6e-66
sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondri... 248 6e-66
sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondri... 248 8e-66
sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial 247 2e-65
>sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 252 bits (644), Expect = 4e-67
Identities = 110/166 (66%), Positives = 134/166 (80%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN+ E+ EA+ K DV +++Q A+KFNGGGH+NH+IFW NL PKGGGE
Sbjct: 53 KHHAAYVNNLNATEEKYHEALAKGDVTTQVALQPALKFNGGGHINHTIFWTNLSPKGGGE 112
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSFE FK +L+A +VG+QGSGW WLG NK+ GRL I C NQDPL+
Sbjct: 113 PKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQG 172
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRFS 513
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R++
Sbjct: 173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYT 218
>sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 251 bits (640), Expect = 1e-66
Identities = 110/165 (66%), Positives = 132/165 (80%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHA YVNNLN E+ EA+ K DV +++Q A+KFNGGGH+NHSIFW NL PKGGGE
Sbjct: 53 KHHATYVNNLNVTEEKYHEALAKGDVTTQVALQPALKFNGGGHINHSIFWTNLSPKGGGE 112
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSFE FK +L+A +VG+QGSGW WLG NK+ GRL I C NQDPL+
Sbjct: 113 PKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQG 172
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V+ R+
Sbjct: 173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSQRY 217
>sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 250 bits (638), Expect = 2e-66
Identities = 111/166 (66%), Positives = 132/166 (79%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN A E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 53 KHHAAYVNNLNVAEEKYREALEKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 112
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSF FK +L+A +VG+QGSGW WLG NK+ GRL I C NQDPL+
Sbjct: 113 PQGELLEAIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQG 172
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRFS 513
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R++
Sbjct: 173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTARYT 218
>sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP2|SODM_MACMU Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 250 bits (638), Expect = 2e-66
Identities = 111/165 (67%), Positives = 132/165 (80%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 29 KHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 88
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSFE FK +L+AA+VG+QGSGW WLG NK+ G+L I C NQDPL+
Sbjct: 89 PKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPLQG 148
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 149 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 248 bits (634), Expect = 6e-66
Identities = 110/165 (66%), Positives = 131/165 (79%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 53 KHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 112
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+ G L I C NQDPL+
Sbjct: 113 PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQG 172
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 248 bits (634), Expect = 6e-66
Identities = 110/165 (66%), Positives = 131/165 (79%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 53 KHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 112
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+ G L I C NQDPL+
Sbjct: 113 PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQG 172
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 248 bits (634), Expect = 6e-66
Identities = 110/165 (66%), Positives = 131/165 (79%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 29 KHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 88
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+ G L I C NQDPL+
Sbjct: 89 PKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQG 148
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 149 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 248 bits (634), Expect = 6e-66
Identities = 110/165 (66%), Positives = 130/165 (78%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 29 KHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 88
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSF+ FK L+AA+VG+QGSGW WLG NK+ G L I C NQDPL+
Sbjct: 89 PKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQG 148
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 149 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
>sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 248 bits (633), Expect = 8e-66
Identities = 110/165 (66%), Positives = 132/165 (80%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 53 KHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 112
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSFE +K +L+AA+VG+QGSGW WLG NK+ G+L I C NQDPL+
Sbjct: 113 PKGELLEAIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPLQG 172
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 173 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217
>sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 247 bits (630), Expect = 2e-65
Identities = 109/165 (66%), Positives = 130/165 (78%)
Frame = +1
Query: 16 KHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGHLNHSIFWKNLCPKGGGE 195
KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH+NHSIFW NL P GGGE
Sbjct: 29 KHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGE 88
Query: 196 PDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKKNGRLHITTCGNQDPLEA 375
P G LL A++R+FGSF+ FK +L+A +VG+QGSGW WLG NK+ G L I C NQDPL+
Sbjct: 89 PKGELLEAIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQG 148
Query: 376 TTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAHRF 510
TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V R+
Sbjct: 149 TTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,656,074
Number of Sequences: 369166
Number of extensions: 1801432
Number of successful extensions: 4899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4563
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)