Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N12
(496 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial... 221 6e-58
sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondri... 220 1e-57
sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondri... 219 4e-57
sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondri... 217 1e-56
sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondri... 217 1e-56
sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial 217 1e-56
sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondri... 217 1e-56
sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondri... 217 1e-56
sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondri... 217 1e-56
sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial 216 3e-56
>sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 221 bits (564), Expect = 6e-58
Identities = 94/136 (69%), Positives = 114/136 (83%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
+++Q A+KFNGGGH+NHSIFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG
Sbjct: 82 VALQPALKFNGGGHINHSIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVG 141
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ GRL I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 142 VQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 201
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V+ R+
Sbjct: 202 KAIWNVINWENVSQRY 217
>sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 220 bits (561), Expect = 1e-57
Identities = 93/137 (67%), Positives = 114/137 (83%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
+++Q A+KFNGGGH+NH+IFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG
Sbjct: 82 VALQPALKFNGGGHINHTIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVG 141
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ GRL I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 142 VQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 201
Query: 372 KALWRIINWGDVAHRFS 422
KA+W +INW +V R++
Sbjct: 202 KAIWNVINWENVTERYT 218
>sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP2|SODM_MACMU Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 219 bits (557), Expect = 4e-57
Identities = 94/136 (69%), Positives = 113/136 (83%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSFE FK +L+AA+VG
Sbjct: 58 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVG 117
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G+L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 118 VQGSGWGWLGFNKERGQLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 178 KAIWNVINWENVTERY 193
>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 217 bits (553), Expect = 1e-56
Identities = 93/136 (68%), Positives = 112/136 (82%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG
Sbjct: 82 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVG 141
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 142 VQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 201
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 202 KAIWNVINWENVTERY 217
>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 217 bits (553), Expect = 1e-56
Identities = 93/136 (68%), Positives = 112/136 (82%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG
Sbjct: 82 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVG 141
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 142 VQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 201
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 202 KAIWNVINWENVTERY 217
>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 217 bits (553), Expect = 1e-56
Identities = 93/136 (68%), Positives = 112/136 (82%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG
Sbjct: 58 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVG 117
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 118 VQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 178 KAIWNVINWENVTERY 193
>sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 217 bits (553), Expect = 1e-56
Identities = 93/137 (67%), Positives = 112/137 (81%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF FK +L+A +VG
Sbjct: 82 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVG 141
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ GRL I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 142 VQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 201
Query: 372 KALWRIINWGDVAHRFS 422
KA+W +INW +V R++
Sbjct: 202 KAIWNVINWENVTARYT 218
>sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 217 bits (552), Expect = 1e-56
Identities = 93/136 (68%), Positives = 113/136 (83%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSFE +K +L+AA+VG
Sbjct: 82 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVG 141
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G+L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 142 VQGSGWGWLGFNKERGQLQIAACLNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 201
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 202 KAIWNVINWENVTERY 217
>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 217 bits (552), Expect = 1e-56
Identities = 93/136 (68%), Positives = 111/136 (81%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK L+AA+VG
Sbjct: 58 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVG 117
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 118 VQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 178 KAIWNVINWENVTERY 193
>sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 216 bits (549), Expect = 3e-56
Identities = 92/136 (67%), Positives = 111/136 (81%)
Frame = +3
Query: 12 ISMQNAIKFNGGGHLNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVG 191
I++Q A+KFNGGGH+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+A +VG
Sbjct: 58 IALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVG 117
Query: 192 IQGSGWAWLGLNKKNGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYV 371
+QGSGW WLG NK+ G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+
Sbjct: 118 VQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYL 177
Query: 372 KALWRIINWGDVAHRF 419
KA+W +INW +V R+
Sbjct: 178 KAIWNVINWENVTERY 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,003,494
Number of Sequences: 369166
Number of extensions: 1604289
Number of successful extensions: 4359
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4109
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)