Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_J18
(635 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondri... 276 3e-74
sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial... 275 9e-74
sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondri... 274 2e-73
sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondri... 274 2e-73
sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondri... 272 5e-73
sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondri... 272 5e-73
sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial 272 5e-73
sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondri... 272 5e-73
sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondri... 272 6e-73
sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial 271 1e-72
>sp|P09671|SODM_MOUSE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 276 bits (706), Expect = 3e-74
Identities = 121/183 (66%), Positives = 148/183 (80%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN+ E+ EA+ K DV +++Q A+KFNGGGH
Sbjct: 36 GALEPHINAQIMQLHHSKHHAAYVNNLNATEEKYHEALAKGDVTTQVALQPALKFNGGGH 95
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NH+IFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QGSGW WLG NK+
Sbjct: 96 INHTIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKE 155
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
GRL I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 156 QGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 215
Query: 553 RFS 561
R++
Sbjct: 216 RYT 218
>sp|P07895|SODM_RAT Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 275 bits (702), Expect = 9e-74
Identities = 121/182 (66%), Positives = 146/182 (80%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHA YVNNLN E+ EA+ K DV +++Q A+KFNGGGH
Sbjct: 36 GALEPHINAQIMQLHHSKHHATYVNNLNVTEEKYHEALAKGDVTTQVALQPALKFNGGGH 95
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL PKGGGEP G LL A++R+FGSFE FK +L+A +VG+QGSGW WLG NK+
Sbjct: 96 INHSIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKE 155
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
GRL I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V+
Sbjct: 156 QGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSQ 215
Query: 553 RF 558
R+
Sbjct: 216 RY 217
>sp|P41976|SODM_BOVIN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 274 bits (700), Expect = 2e-73
Identities = 122/183 (66%), Positives = 146/183 (79%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN A E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 36 GALEPHINAQIMQLHHSKHHAAYVNNLNVAEEKYREALEKGDVTAQIALQPALKFNGGGH 95
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSF FK +L+A +VG+QGSGW WLG NK+
Sbjct: 96 INHSIFWTNLSPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGFNKE 155
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
GRL I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 156 QGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTA 215
Query: 553 RFS 561
R++
Sbjct: 216 RYT 218
>sp|Q8HXP4|SODM_MACFU Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP2|SODM_MACMU Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 274 bits (700), Expect = 2e-73
Identities = 122/182 (67%), Positives = 146/182 (80%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGH 71
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSFE FK +L+AA+VG+QGSGW WLG NK+
Sbjct: 72 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKE 131
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G+L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 132 RGQLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191
Query: 553 RF 558
R+
Sbjct: 192 RY 193
>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 272 bits (696), Expect = 5e-73
Identities = 121/182 (66%), Positives = 145/182 (79%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 36 GALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGH 95
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+
Sbjct: 96 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKE 155
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 156 RGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 215
Query: 553 RF 558
R+
Sbjct: 216 RY 217
>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 272 bits (696), Expect = 5e-73
Identities = 121/182 (66%), Positives = 145/182 (79%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 36 GALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGH 95
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+
Sbjct: 96 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKE 155
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 156 RGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 215
Query: 553 RF 558
R+
Sbjct: 216 RY 217
>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 272 bits (696), Expect = 5e-73
Identities = 121/182 (66%), Positives = 145/182 (79%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGH 71
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+AA+VG+QGSGW WLG NK+
Sbjct: 72 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKE 131
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 132 RGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191
Query: 553 RF 558
R+
Sbjct: 192 RY 193
>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial
sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 272 bits (696), Expect = 5e-73
Identities = 121/182 (66%), Positives = 144/182 (79%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLNDTEEKYKEALAKGDVTAQIALQPALKFNGGGH 71
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK L+AA+VG+QGSGW WLG NK+
Sbjct: 72 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKE 131
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 132 RGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191
Query: 553 RF 558
R+
Sbjct: 192 RY 193
>sp|Q5FB30|SODM_MACNE Superoxide dismutase [Mn], mitochondrial precursor
Length = 222
Score = 272 bits (695), Expect = 6e-73
Identities = 121/182 (66%), Positives = 146/182 (80%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 36 GALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGH 95
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSFE +K +L+AA+VG+QGSGW WLG NK+
Sbjct: 96 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKE 155
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G+L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 156 RGQLQIAACLNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 215
Query: 553 RF 558
R+
Sbjct: 216 RY 217
>sp|Q8HXP5|SODM_HYLLA Superoxide dismutase [Mn], mitochondrial
Length = 198
Score = 271 bits (692), Expect = 1e-72
Identities = 120/182 (65%), Positives = 144/182 (79%)
Frame = +1
Query: 13 GALEPSISADIMEVHHKKHHAAYVNNLNSALEQLDEAVHKNDVNKIISMQNAIKFNGGGH 192
GALEP I+A IM++HH KHHAAYVNNLN E+ EA+ K DV I++Q A+KFNGGGH
Sbjct: 12 GALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGH 71
Query: 193 LNHSIFWKNLCPKGGGEPDGSLLAALQREFGSFENFKTELSAAAVGIQGSGWAWLGLNKK 372
+NHSIFW NL P GGGEP G LL A++R+FGSF+ FK +L+A +VG+QGSGW WLG NK+
Sbjct: 72 INHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGFNKE 131
Query: 373 NGRLHITTCGNQDPLEATTGLKPLLGFDVWEHAYYLQYKNVRPDYVKALWRIINWGDVAH 552
G L I C NQDPL+ TTGL PLLG DVWEHAYYLQYKNVRPDY+KA+W +INW +V
Sbjct: 132 RGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTE 191
Query: 553 RF 558
R+
Sbjct: 192 RY 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,828,790
Number of Sequences: 369166
Number of extensions: 1861470
Number of successful extensions: 5305
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4953
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)