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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01057
         (1033 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NP79|CF055_HUMAN  Protein C6orf55 (Dopamine-responsive ...   220   6e-57
sp|Q9CR26|CF055_MOUSE  Protein C6orf55 homolog                    218   2e-56
sp|Q06263|VTA1_YEAST  Vacuolar protein sorting-associated pr...    52   4e-06
sp|Q9BRQ0|PYGO2_HUMAN  Pygopus homolog 2                           34   0.60 
sp|P0C053|ESSB_STAAU  Protein essB >gi|68565535|sp|Q99WU0|ES...    34   0.78 
sp|Q6GK25|ESSB_STAAR  Protein essB                                 34   0.78 
sp|P49586|PCY1A_MOUSE  Choline-phosphate cytidylyltransferas...    32   2.3  
sp|P49584|PCY1A_CRIGR  Choline-phosphate cytidylyltransferas...    32   2.3  
sp|P19836|PCY1A_RAT  Choline-phosphate cytidylyltransferase ...    32   2.3  
sp|Q980W4|UPPS_SULSO  Undecaprenyl pyrophosphate synthetase ...    32   2.3  

>sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive protein DRG-1)
          Length = 307

 Score =  220 bits (560), Expect = 6e-57
 Identities = 125/303 (41%), Positives = 173/303 (57%), Gaps = 28/303 (9%)
 Frame = +2

Query: 131 IPAKLKPLTTYLKTAAEVETRDPVVAYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDK 310
           +PA+ K +  +L+TA E + RDPVVAYYCRLYA+Q GM++D  + E +K+L +LMD L+ 
Sbjct: 10  LPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEA 69

Query: 311 MKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKEGNFEQATIRSFMTSGFLMDVLS 490
           +K ++ DNE+I+ E VG AH+E+YAL++F YAD +D+ G F +  I+SF T+  L+DV++
Sbjct: 70  LKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVIT 129

Query: 491 VFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPI----DND-QEISDFNFXXXXXX 655
           VFGE+ ++  K RKYA+WKA YI+ CLK GE P +GP+    DND +E  D         
Sbjct: 130 VFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQ 189

Query: 656 XXXXXGSSNVPSSTQP-----------------NPKPRTQKPVGGVDNESKPINPTIASS 784
                 SS    S  P                 N         G   N  +P   TI   
Sbjct: 190 PTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTI--- 246

Query: 785 YHPEPPPAAANS------HLTAEDFAHAEKLCKYAASALQYQDSPTALEYLTKCVDLLKY 946
             P   PA  N+       LT EDFA A+K CKYA SALQY+D  TA++ L K + LL  
Sbjct: 247 --PAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTT 304

Query: 947 GKK 955
           G++
Sbjct: 305 GRE 307

>sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog
          Length = 309

 Score =  218 bits (556), Expect = 2e-56
 Identities = 121/300 (40%), Positives = 178/300 (59%), Gaps = 25/300 (8%)
 Frame = +2

Query: 131 IPAKLKPLTTYLKTAAEVETRDPVVAYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDK 310
           +PA+ K +  +L+TA E + RDPVVAYYCRLYA+Q GM++D  + E +K+L +LMD L+ 
Sbjct: 10  LPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEA 69

Query: 311 MKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKEGNFEQATIRSFMTSGFLMDVLS 490
           +K ++ DNE+++ E VG AH+E+YAL++F YAD +D+ G F +  I+SF T+  L+DV++
Sbjct: 70  LKKQLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVIT 129

Query: 491 VFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPI----DNDQEISDFNFXXXXXXX 658
           VFGE+ ++  K RKYA+WKA YI+ CLK GE P +GP+    +ND E ++          
Sbjct: 130 VFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENEDVGATSLPTQ 189

Query: 659 XXXXGSSNV--PSSTQPNPKPRTQKPVGG----------------VDNESKPINPTIASS 784
                SS+   PS+  P      Q P G                   N  +P   T+ ++
Sbjct: 190 PPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEVPHSTGVTSNAVQPSPQTVPAA 249

Query: 785 YHPEPPPAAANS---HLTAEDFAHAEKLCKYAASALQYQDSPTALEYLTKCVDLLKYGKK 955
              +P    A+     LT EDFA A+K CKYA SALQY+D  TA++ L K + LL  G++
Sbjct: 250 PAVDPDLYTASQGDIRLTPEDFARAQKYCKYAGSALQYEDVGTAVQNLQKALRLLTTGRE 309

>sp|Q06263|VTA1_YEAST Vacuolar protein sorting-associated protein VTA1 (VPS20-associated
           protein 1)
          Length = 330

 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 67/309 (21%), Positives = 121/309 (39%), Gaps = 62/309 (20%)
 Frame = +2

Query: 200 VVAYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDKMKNEMKD--------------NE 337
           ++ YY +LYAV+  +  +  S E      EL+D ++  K E+                N 
Sbjct: 22  IIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNT 81

Query: 338 SISSETVGQAHVEDYALRLFSYADKKDKEGNFEQATIRSFMTSGFLMD-VLSVFGE-VGE 511
            I  +   + ++ ++ + L++   K+ K+G ++    RS      L   +L ++ E + E
Sbjct: 82  LIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISE 141

Query: 512 -DIEKCRKYAKWKAVYINQCLKKGEIPHSGP--------IDNDQEISDFNFXXXXXXXXX 664
                 +K  K+  +Y+++ L KGEI  S           D+ +EI D +          
Sbjct: 142 TSTNSLQKRIKYCKIYLSK-LAKGEIGSSDEKTLDYADFADDSEEIKDEDVDHQTSDLEN 200

Query: 665 XXGSSNVPSSTQPNPKPRTQKPVG----------GVDNESKPINPT-------------- 772
              +++      P  +  + +PV            V+ E + ++                
Sbjct: 201 --NNNDKVEGLAPKDQTTSYEPVDEVPEFIDDADSVNEEEQTVDKNEDAITKDEQQVVKK 258

Query: 773 ---IASSYHPEPPPAAANSHLTAEDFA----------HAEKLCKYAASALQYQDSPTALE 913
              +     P  P AA +   T ++              +KL KYA SAL Y+D PTA +
Sbjct: 259 EVDLTRPSAPSEPAAAEHKSYTKDELTKIMDRASKIEQIQKLAKYAISALNYEDLPTAKD 318

Query: 914 YLTKCVDLL 940
            LTK +DLL
Sbjct: 319 ELTKALDLL 327

>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2
          Length = 406

 Score = 34.3 bits (77), Expect = 0.60
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 671 GSSNVPSSTQPNPKPRTQKPVGGVDNESKPINPTIASSYHPEP----PPAAANSH 823
           G  ++P +T P P P    P  G ++  KP+NP  ++++  EP    P AA N +
Sbjct: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGN 287

>sp|P0C053|ESSB_STAAU Protein essB
 sp|Q99WU0|ESSB_STAAM Protein essB
 sp|Q7A1V2|ESSB_STAAW Protein essB
 sp|Q7A7S0|ESSB_STAAN Protein essB
 sp|Q6GCI6|ESSB_STAAS Protein essB
 sp|Q5HJ87|ESSB_STAAC Protein essB
          Length = 444

 Score = 33.9 bits (76), Expect = 0.78
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = +2

Query: 251 DRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 424
           D+ S E+KKY  +L D LDK K ++KD ++ S E   +A  +D  L+     +KK KE
Sbjct: 374 DKRSEETKKYNDKLQDILDKEK-QVKDEKAKSEEE--KAKAKDEKLKQQEENEKKQKE 428

>sp|Q6GK25|ESSB_STAAR Protein essB
          Length = 444

 Score = 33.9 bits (76), Expect = 0.78
 Identities = 23/58 (39%), Positives = 34/58 (58%)
 Frame = +2

Query: 251 DRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 424
           D+ S E+KKY  +L D LDK K ++KD ++ S E   +A  +D  L+     +KK KE
Sbjct: 374 DKRSEETKKYNDKLQDILDKEK-QVKDEKAKSEEE--KAKAKDEKLKQQEENEKKQKE 428

>sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferase A (Phosphorylcholine
           transferase A) (CTP:phosphocholine cytidylyltransferase
           A) (CT A) (CCT A) (CCT-alpha)
          Length = 367

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = +2

Query: 230 VQRGM---ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFS 400
           +QRG    EL+ S    KKY   L + +DK+K ++KD E  S E V +  VE+ ++ L  
Sbjct: 221 LQRGYTAKELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEEKSIDLIQ 276

Query: 401 YADKKDKEGNFEQATIRSFMTSGFLMDVL 487
             ++K +E  F  + +  F   G L  +L
Sbjct: 277 KWEEKSRE--FIGSFLEMFGPEGALKHML 303

>sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferase A (Phosphorylcholine
           transferase A) (CTP:phosphocholine cytidylyltransferase
           A) (CT A) (CCT A) (CCT-alpha)
          Length = 367

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = +2

Query: 230 VQRGM---ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFS 400
           +QRG    EL+ S    KKY   L + +DK+K ++KD E  S E V +  VE+ ++ L  
Sbjct: 221 LQRGYTAKELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEERSIDLIQ 276

Query: 401 YADKKDKEGNFEQATIRSFMTSGFLMDVL 487
             ++K +E  F  + +  F   G L  +L
Sbjct: 277 TWEEKSRE--FIGSFLEMFGPEGALKHML 303

>sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase A (Phosphorylcholine
           transferase A) (CTP:phosphocholine cytidylyltransferase
           A) (CT A) (CCT A) (CCT-alpha)
          Length = 367

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
 Frame = +2

Query: 230 VQRGM---ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFS 400
           +QRG    EL+ S    KKY   L + +DK+K ++KD E  S E V +  VE+ ++ L  
Sbjct: 221 LQRGYTAKELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEEKSIDLIQ 276

Query: 401 YADKKDKEGNFEQATIRSFMTSGFLMDVL 487
             ++K +E  F  + +  F   G L  +L
Sbjct: 277 KWEEKSRE--FIGSFLEMFGPEGALKHML 303

>sp|Q980W4|UPPS_SULSO Undecaprenyl pyrophosphate synthetase (UPP synthetase)
           (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 262

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 2/166 (1%)
 Frame = +2

Query: 140 KLKPLTTYLKTAAEVETRDPVV-AYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDKMK 316
           +L  +TTY+K   +    DP+V  Y  ++ A+ +  +L +   +    ++E   N DK K
Sbjct: 96  ELSIITTYIKRGIQDLLEDPIVDKYEVKVSAIGKLDKLPKDLIDYLNRVVEKTSNYDKRK 155

Query: 317 NEMKDNESISSETVGQAHVEDYALRLF-SYADKKDKEGNFEQATIRSFMTSGFLMDVLSV 493
                  +++    G+  + D  +RL   Y + K  +    + T R +     L D+  V
Sbjct: 156 ------LTLAICYGGRQEILDAVVRLLDDYRNGKIVKSEINEETFRKYFYDSELQDIDLV 209

Query: 494 FGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPIDNDQEISDF 631
               GE   +   +  W   Y      +   P    ID  + I  F
Sbjct: 210 IRTSGE--VRISNFLLWHVAYSELFFCEAYWPEFRKIDLWRAIRSF 253

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,473,428
Number of Sequences: 369166
Number of extensions: 1875786
Number of successful extensions: 6269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6249
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 11101059640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_026_K02
2. Dr_sW_010_O17
3. Dr_sW_022_P11
4. Dr_sW_022_O20
5. Dr_sW_008_N09