Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_O17
(645 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive ... 158 1e-38
sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog 156 5e-38
sp|P0C053|ESSB_STAAU Protein essB >gi|68565535|sp|Q99WU0|ES... 34 0.37
sp|Q6GK25|ESSB_STAAR Protein essB 34 0.37
sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2 33 0.63
sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain protein 11 (Ank... 32 1.4
sp|P82980|RET5_HUMAN Retinol-binding protein III, cellular ... 32 1.8
sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferas... 32 1.8
sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferas... 32 1.8
sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase ... 32 1.8
>sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive protein DRG-1)
Length = 307
Score = 158 bits (399), Expect = 1e-38
Identities = 94/242 (38%), Positives = 129/242 (53%), Gaps = 28/242 (11%)
Frame = +2
Query: 2 GMELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKD 181
GM++D + E +K+L +LMD L+ +K ++ DNE+I+ E VG AH+E+YAL++F YAD +D
Sbjct: 46 GMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAITQEIVGCAHLENYALKMFLYADNED 105
Query: 182 KEGNFEQATIRSFMTSGFLMDVLSVFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSG 361
+ G F + I+SF T+ L+DV++VFGE+ ++ K RKYA+WKA YI+ CLK GE P +G
Sbjct: 106 RAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAG 165
Query: 362 PI----DND-QEISDFNFXXXXXXXXXXXGSSNVPSSTQP-----------------NPK 475
P+ DND +E D SS S P N
Sbjct: 166 PVGIEEDNDIEENEDAGAASLPTQPTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTP 225
Query: 476 PRTQKPVGGVDNESKPTNPTIASSYHPEPPPAAANS------HLTAEDFAHAEKLCKYAA 637
G N +PT TI P PA N+ LT EDFA A+K CKYA
Sbjct: 226 AEVPHSTGVASNTIQPTPQTI-----PAIDPALFNTISQGDVRLTPEDFARAQKYCKYAG 280
Query: 638 SA 643
SA
Sbjct: 281 SA 282
>sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog
Length = 309
Score = 156 bits (394), Expect = 5e-38
Identities = 89/239 (37%), Positives = 134/239 (56%), Gaps = 25/239 (10%)
Frame = +2
Query: 2 GMELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKD 181
GM++D + E +K+L +LMD L+ +K ++ DNE+++ E VG AH+E+YAL++F YAD +D
Sbjct: 46 GMKIDSKTPECRKFLSKLMDQLEALKKQLGDNEAVTQEIVGCAHLENYALKMFLYADNED 105
Query: 182 KEGNFEQATIRSFMTSGFLMDVLSVFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSG 361
+ G F + I+SF T+ L+DV++VFGE+ ++ K RKYA+WKA YI+ CLK GE P +G
Sbjct: 106 RAGRFHKNMIKSFYTASLLIDVITVFGELTDENVKHRKYARWKATYIHNCLKNGETPQAG 165
Query: 362 PI----DNDQEISDFNFXXXXXXXXXXXGSSNV--PSSTQPNPKPRTQKPVGG------- 502
P+ +ND E ++ SS+ PS+ P Q P G
Sbjct: 166 PVGIEEENDVEENEDVGATSLPTQPPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTP 225
Query: 503 ---------VDNESKPTNPTIASSYHPEPPPAAANS---HLTAEDFAHAEKLCKYAASA 643
N +P+ T+ ++ +P A+ LT EDFA A+K CKYA SA
Sbjct: 226 AEVPHSTGVTSNAVQPSPQTVPAAPAVDPDLYTASQGDIRLTPEDFARAQKYCKYAGSA 284
>sp|P0C053|ESSB_STAAU Protein essB
sp|Q99WU0|ESSB_STAAM Protein essB
sp|Q7A1V2|ESSB_STAAW Protein essB
sp|Q7A7S0|ESSB_STAAN Protein essB
sp|Q6GCI6|ESSB_STAAS Protein essB
sp|Q5HJ87|ESSB_STAAC Protein essB
Length = 444
Score = 33.9 bits (76), Expect = 0.37
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +2
Query: 14 DRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 187
D+ S E+KKY +L D LDK K ++KD ++ S E +A +D L+ +KK KE
Sbjct: 374 DKRSEETKKYNDKLQDILDKEK-QVKDEKAKSEEE--KAKAKDEKLKQQEENEKKQKE 428
>sp|Q6GK25|ESSB_STAAR Protein essB
Length = 444
Score = 33.9 bits (76), Expect = 0.37
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +2
Query: 14 DRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 187
D+ S E+KKY +L D LDK K ++KD ++ S E +A +D L+ +KK KE
Sbjct: 374 DKRSEETKKYNDKLQDILDKEK-QVKDEKAKSEEE--KAKAKDEKLKQQEENEKKQKE 428
>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2
Length = 406
Score = 33.1 bits (74), Expect = 0.63
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 434 GSSNVPSSTQPNPKPRTQKPVGGVDNESKPTNPTIASSYHPEP----PPAAANSH 586
G ++P +T P P P P G ++ KP NP ++++ EP P AA N +
Sbjct: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGN 287
>sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain protein 11 (Ankyrin repeat-containing cofactor
1)
Length = 2664
Score = 32.0 bits (71), Expect = 1.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +2
Query: 452 SSTQPNPKPRTQKPVGGVDNESKPTNPTIASSYHPEPPPAAANSHLTAEDFAHAE 616
SS +P P P Q+P+G D ++ P AS P+ P + A D A E
Sbjct: 2238 SSVEPAPVPPEQRPLGSGDQGAEAEGPPAASLCAPDGPAPNTVAQAQAADGAGPE 2292
>sp|P82980|RET5_HUMAN Retinol-binding protein III, cellular (CRBP-III) (HRBPiso)
Length = 135
Score = 31.6 bits (70), Expect = 1.8
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Frame = +2
Query: 119 VGQAHVEDY--------ALRLFSYADKKDKEGNFE--QATIRSFMTSGFLMDVLSVFGEV 268
V Q ++EDY A+R + K DKE + T+R+ T V E
Sbjct: 12 VSQKNMEDYLQALNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQFDVGVEF 71
Query: 269 GEDIE-----KCRKYAKWKAVYINQCLKKGEIPHSG 361
ED+ KC+ W+ ++ C++KGE+P+ G
Sbjct: 72 EEDLRSVDGRKCQTIVTWEEEHL-VCVQKGEVPNRG 106
>sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferase A (Phosphorylcholine
transferase A) (CTP:phosphocholine cytidylyltransferase
A) (CT A) (CCT A) (CCT-alpha)
Length = 367
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 8 ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 187
EL+ S KKY L + +DK+K ++KD E S E V + VE+ ++ L ++K +E
Sbjct: 229 ELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEEKSIDLIQKWEEKSRE 284
Query: 188 GNFEQATIRSFMTSGFLMDVL 250
F + + F G L +L
Sbjct: 285 --FIGSFLEMFGPEGALKHML 303
>sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferase A (Phosphorylcholine
transferase A) (CTP:phosphocholine cytidylyltransferase
A) (CT A) (CCT A) (CCT-alpha)
Length = 367
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 8 ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 187
EL+ S KKY L + +DK+K ++KD E S E V + VE+ ++ L ++K +E
Sbjct: 229 ELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEERSIDLIQTWEEKSRE 284
Query: 188 GNFEQATIRSFMTSGFLMDVL 250
F + + F G L +L
Sbjct: 285 --FIGSFLEMFGPEGALKHML 303
>sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase A (Phosphorylcholine
transferase A) (CTP:phosphocholine cytidylyltransferase
A) (CT A) (CCT A) (CCT-alpha)
Length = 367
Score = 31.6 bits (70), Expect = 1.8
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 8 ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 187
EL+ S KKY L + +DK+K ++KD E S E V + VE+ ++ L ++K +E
Sbjct: 229 ELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEEKSIDLIQKWEEKSRE 284
Query: 188 GNFEQATIRSFMTSGFLMDVL 250
F + + F G L +L
Sbjct: 285 --FIGSFLEMFGPEGALKHML 303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,065,142
Number of Sequences: 369166
Number of extensions: 1304563
Number of successful extensions: 5298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5263
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)