Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_P11
(544 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive ... 93 4e-19
sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog 92 8e-19
sp|Q06263|VTA1_YEAST Vacuolar protein sorting-associated pr... 42 7e-04
sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2 34 0.20
sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain protein 11 (Ank... 32 0.76
sp|Q6UUV9|MECT1_HUMAN Mucoepidermoid carcinoma translocated... 31 2.2
sp|Q04118|PRB3_HUMAN Basic salivary proline-rich protein 3 ... 31 2.2
sp|Q8NA70|FA47B_HUMAN Protein FAM47B 30 3.8
sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1 30 3.8
sp|P10163|PR4S_HUMAN Basic salivary proline-rich protein 4 ... 30 3.8
>sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive protein DRG-1)
Length = 307
Score = 93.2 bits (230), Expect = 4e-19
Identities = 66/183 (36%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Frame = +2
Query: 2 VFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPI----DND-QEISDFNFXXXXXX 166
VFGE+ ++ K RKYA+WKA YI+ CLK GE P +GP+ DND +E D
Sbjct: 130 VFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQ 189
Query: 167 XXXXXGSSNVPSSTQP-----------------NPKPRTQKPVGGVDNESKPINPTIASS 295
SS S P N G N +P TI
Sbjct: 190 PTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTI--- 246
Query: 296 YHPEPPPAAANS------HLTAEDFAHAEKLCKYAASALQYQDSPTALEYLTKCVDLLKY 457
P PA N+ LT EDFA A+K CKYA SALQY+D TA++ L K + LL
Sbjct: 247 --PAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTT 304
Query: 458 GKK 466
G++
Sbjct: 305 GRE 307
>sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog
Length = 309
Score = 92.0 bits (227), Expect = 8e-19
Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 25/180 (13%)
Frame = +2
Query: 2 VFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPI----DNDQEISDFNFXXXXXXX 169
VFGE+ ++ K RKYA+WKA YI+ CLK GE P +GP+ +ND E ++
Sbjct: 130 VFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENEDVGATSLPTQ 189
Query: 170 XXXXGSSNV--PSSTQPNPKPRTQKPVGG----------------VDNESKPINPTIASS 295
SS+ PS+ P Q P G N +P T+ ++
Sbjct: 190 PPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEVPHSTGVTSNAVQPSPQTVPAA 249
Query: 296 YHPEPPPAAANS---HLTAEDFAHAEKLCKYAASALQYQDSPTALEYLTKCVDLLKYGKK 466
+P A+ LT EDFA A+K CKYA SALQY+D TA++ L K + LL G++
Sbjct: 250 PAVDPDLYTASQGDIRLTPEDFARAQKYCKYAGSALQYEDVGTAVQNLQKALRLLTTGRE 309
>sp|Q06263|VTA1_YEAST Vacuolar protein sorting-associated protein VTA1 (VPS20-associated
protein 1)
Length = 330
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Frame = +2
Query: 302 PEPPPAAANSHLTAEDFA----------HAEKLCKYAASALQYQDSPTALEYLTKCVDLL 451
P P AA + T ++ +KL KYA SAL Y+D PTA + LTK +DLL
Sbjct: 268 PSEPAAAEHKSYTKDELTKIMDRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLL 327
>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2
Length = 406
Score = 34.3 bits (77), Expect = 0.20
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 182 GSSNVPSSTQPNPKPRTQKPVGGVDNESKPINPTIASSYHPEP----PPAAANSH 334
G ++P +T P P P P G ++ KP+NP ++++ EP P AA N +
Sbjct: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGN 287
>sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain protein 11 (Ankyrin repeat-containing cofactor
1)
Length = 2664
Score = 32.3 bits (72), Expect = 0.76
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +2
Query: 200 SSTQPNPKPRTQKPVGGVDNESKPINPTIASSYHPEPPPAAANSHLTAEDFAHAEKLCKY 379
SS +P P P Q+P+G D ++ P AS P+ P + A D A E +
Sbjct: 2238 SSVEPAPVPPEQRPLGSGDQGAEAEGPPAASLCAPDGPAPNTVAQAQAADGAGPEDDTEA 2297
Query: 380 AASALQYQDSPTALE 424
+ +A + P ++
Sbjct: 2298 SRAAAPAEGPPGGIQ 2312
>sp|Q6UUV9|MECT1_HUMAN Mucoepidermoid carcinoma translocated protein 1 (Transducer of
regulated cAMP response element-binding protein 1)
(Transducer of CREB protein 1)
Length = 634
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 197 PSSTQPNPKPRTQKPV----GGVDNESKPINPTIASSYHPEPPPAA 322
P+S QP P P Q PV GG P+ P+ + + P+PPP A
Sbjct: 375 PASQQPPPPPPPQAPVRLPPGG------PLLPSASLTRGPQPPPLA 414
>sp|Q04118|PRB3_HUMAN Basic salivary proline-rich protein 3 precursor (Parotid salivary
glycoprotein G1) (Proline-rich protein G1)
Length = 309
Score = 30.8 bits (68), Expect = 2.2
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 191 NVPSSTQPNPKPRTQKPVGGVDNESKPINPTIASSYHPEPPPAAANSH 334
N P P +P+ P GG N +P+ P P PPP H
Sbjct: 255 NKPQRPPPPRRPQGPPPPGG--NPQQPLPPPAGKPQGPPPPPQGGRPH 300
>sp|Q8NA70|FA47B_HUMAN Protein FAM47B
Length = 645
Score = 30.0 bits (66), Expect = 3.8
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = +2
Query: 200 SSTQPNPKP------RTQKPVGGVDNESKPINPTIASSYHPEPPPAAANSHLTAE 346
SS P P R P GV + T+ SS HPEPP A SHL E
Sbjct: 233 SSLHPEPPETRASHLRVDPPETGVSHLCPEPPKTLVSSVHPEPPDTGA-SHLCPE 286
>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1
Length = 409
Score = 30.0 bits (66), Expect = 3.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 254 DNESKPINPTIASSYHPEPPPAAANSHLTAEDFAHAEKLCKYAASALQYQDSPTALE 424
D+E + A + HP P + D A AE +C +A ++ SP +++
Sbjct: 42 DDEDRICPKCRADNLHPVSPGSPLTQEKVHSDVAEAEIMCPFAGVGCSFKGSPQSMQ 98
>sp|P10163|PR4S_HUMAN Basic salivary proline-rich protein 4 allele S precursor (Salivary
proline-rich protein Po) (Parotid o protein) [Contains:
Protein N1; Glycosylated protein A]
Length = 247
Score = 30.0 bits (66), Expect = 3.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 191 NVPSSTQPNPKPRTQKPVGGVDNESKPINPTIASSYHPEPPP 316
N P P KP+ P GG N +P +P P PPP
Sbjct: 192 NKPQGPPPPGKPQGPPPAGG--NPQQPQDPPAGKPQGPPPPP 231
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,662,856
Number of Sequences: 369166
Number of extensions: 1157094
Number of successful extensions: 4239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4220
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)