Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N09
(980 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive ... 220 5e-57
sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog 218 2e-56
sp|Q06263|VTA1_YEAST Vacuolar protein sorting-associated pr... 52 3e-06
sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2 34 0.55
sp|P0C053|ESSB_STAAU Protein essB >gi|68565535|sp|Q99WU0|ES... 34 0.72
sp|Q6GK25|ESSB_STAAR Protein essB 34 0.72
sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferas... 32 2.1
sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferas... 32 2.1
sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase ... 32 2.1
sp|Q980W4|UPPS_SULSO Undecaprenyl pyrophosphate synthetase ... 32 2.1
>sp|Q9NP79|CF055_HUMAN Protein C6orf55 (Dopamine-responsive protein DRG-1)
Length = 307
Score = 220 bits (560), Expect = 5e-57
Identities = 125/303 (41%), Positives = 173/303 (57%), Gaps = 28/303 (9%)
Frame = +3
Query: 81 IPAKLKPLTTYLKTAAEVETRDPVVAYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDK 260
+PA+ K + +L+TA E + RDPVVAYYCRLYA+Q GM++D + E +K+L +LMD L+
Sbjct: 10 LPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEA 69
Query: 261 MKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKEGNFEQATIRSFMTSGFLMDVLS 440
+K ++ DNE+I+ E VG AH+E+YAL++F YAD +D+ G F + I+SF T+ L+DV++
Sbjct: 70 LKKQLGDNEAITQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVIT 129
Query: 441 VFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPI----DND-QEISDFNFXXXXXX 605
VFGE+ ++ K RKYA+WKA YI+ CLK GE P +GP+ DND +E D
Sbjct: 130 VFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEDNDIEENEDAGAASLPTQ 189
Query: 606 XXXXXGSSNVPSSTQP-----------------NPKPRTQKPVGGVDNESKPINPTIASS 734
SS S P N G N +P TI
Sbjct: 190 PTQPSSSSTYDPSNMPSGNYTGIQIPPGAHAPANTPAEVPHSTGVASNTIQPTPQTI--- 246
Query: 735 YHPEPPPAAANS------HLTAEDFAHAEKLCKYAASALQYQDSPTALEYLTKCVDLLKY 896
P PA N+ LT EDFA A+K CKYA SALQY+D TA++ L K + LL
Sbjct: 247 --PAIDPALFNTISQGDVRLTPEDFARAQKYCKYAGSALQYEDVSTAVQNLQKALKLLTT 304
Query: 897 GKK 905
G++
Sbjct: 305 GRE 307
>sp|Q9CR26|CF055_MOUSE Protein C6orf55 homolog
Length = 309
Score = 218 bits (556), Expect = 2e-56
Identities = 121/300 (40%), Positives = 178/300 (59%), Gaps = 25/300 (8%)
Frame = +3
Query: 81 IPAKLKPLTTYLKTAAEVETRDPVVAYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDK 260
+PA+ K + +L+TA E + RDPVVAYYCRLYA+Q GM++D + E +K+L +LMD L+
Sbjct: 10 LPAQFKSIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSKTPECRKFLSKLMDQLEA 69
Query: 261 MKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKEGNFEQATIRSFMTSGFLMDVLS 440
+K ++ DNE+++ E VG AH+E+YAL++F YAD +D+ G F + I+SF T+ L+DV++
Sbjct: 70 LKKQLGDNEAVTQEIVGCAHLENYALKMFLYADNEDRAGRFHKNMIKSFYTASLLIDVIT 129
Query: 441 VFGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPI----DNDQEISDFNFXXXXXXX 608
VFGE+ ++ K RKYA+WKA YI+ CLK GE P +GP+ +ND E ++
Sbjct: 130 VFGELTDENVKHRKYARWKATYIHNCLKNGETPQAGPVGIEEENDVEENEDVGATSLPTQ 189
Query: 609 XXXXGSSNV--PSSTQPNPKPRTQKPVGG----------------VDNESKPINPTIASS 734
SS+ PS+ P Q P G N +P T+ ++
Sbjct: 190 PPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEVPHSTGVTSNAVQPSPQTVPAA 249
Query: 735 YHPEPPPAAANS---HLTAEDFAHAEKLCKYAASALQYQDSPTALEYLTKCVDLLKYGKK 905
+P A+ LT EDFA A+K CKYA SALQY+D TA++ L K + LL G++
Sbjct: 250 PAVDPDLYTASQGDIRLTPEDFARAQKYCKYAGSALQYEDVGTAVQNLQKALRLLTTGRE 309
>sp|Q06263|VTA1_YEAST Vacuolar protein sorting-associated protein VTA1 (VPS20-associated
protein 1)
Length = 330
Score = 51.6 bits (122), Expect = 3e-06
Identities = 67/309 (21%), Positives = 121/309 (39%), Gaps = 62/309 (20%)
Frame = +3
Query: 150 VVAYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDKMKNEMKD--------------NE 287
++ YY +LYAV+ + + S E EL+D ++ K E+ N
Sbjct: 22 IIGYYLQLYAVELILSEEDRSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNT 81
Query: 288 SISSETVGQAHVEDYALRLFSYADKKDKEGNFEQATIRSFMTSGFLMD-VLSVFGE-VGE 461
I + + ++ ++ + L++ K+ K+G ++ RS L +L ++ E + E
Sbjct: 82 LIHDQEKAKIYMLNFTMSLYNEKLKQLKDGPWDVMLKRSLWCCIDLFSCILHLWKENISE 141
Query: 462 -DIEKCRKYAKWKAVYINQCLKKGEIPHSGP--------IDNDQEISDFNFXXXXXXXXX 614
+K K+ +Y+++ L KGEI S D+ +EI D +
Sbjct: 142 TSTNSLQKRIKYCKIYLSK-LAKGEIGSSDEKTLDYADFADDSEEIKDEDVDHQTSDLEN 200
Query: 615 XXGSSNVPSSTQPNPKPRTQKPVG----------GVDNESKPINPT-------------- 722
+++ P + + +PV V+ E + ++
Sbjct: 201 --NNNDKVEGLAPKDQTTSYEPVDEVPEFIDDADSVNEEEQTVDKNEDAITKDEQQVVKK 258
Query: 723 ---IASSYHPEPPPAAANSHLTAEDFA----------HAEKLCKYAASALQYQDSPTALE 863
+ P P AA + T ++ +KL KYA SAL Y+D PTA +
Sbjct: 259 EVDLTRPSAPSEPAAAEHKSYTKDELTKIMDRASKIEQIQKLAKYAISALNYEDLPTAKD 318
Query: 864 YLTKCVDLL 890
LTK +DLL
Sbjct: 319 ELTKALDLL 327
>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2
Length = 406
Score = 34.3 bits (77), Expect = 0.55
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +3
Query: 621 GSSNVPSSTQPNPKPRTQKPVGGVDNESKPINPTIASSYHPEP----PPAAANSH 773
G ++P +T P P P P G ++ KP+NP ++++ EP P AA N +
Sbjct: 233 GLPSLPPNTSPFPGPDPGFPGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGN 287
>sp|P0C053|ESSB_STAAU Protein essB
sp|Q99WU0|ESSB_STAAM Protein essB
sp|Q7A1V2|ESSB_STAAW Protein essB
sp|Q7A7S0|ESSB_STAAN Protein essB
sp|Q6GCI6|ESSB_STAAS Protein essB
sp|Q5HJ87|ESSB_STAAC Protein essB
Length = 444
Score = 33.9 bits (76), Expect = 0.72
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +3
Query: 201 DRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 374
D+ S E+KKY +L D LDK K ++KD ++ S E +A +D L+ +KK KE
Sbjct: 374 DKRSEETKKYNDKLQDILDKEK-QVKDEKAKSEEE--KAKAKDEKLKQQEENEKKQKE 428
>sp|Q6GK25|ESSB_STAAR Protein essB
Length = 444
Score = 33.9 bits (76), Expect = 0.72
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +3
Query: 201 DRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFSYADKKDKE 374
D+ S E+KKY +L D LDK K ++KD ++ S E +A +D L+ +KK KE
Sbjct: 374 DKRSEETKKYNDKLQDILDKEK-QVKDEKAKSEEE--KAKAKDEKLKQQEENEKKQKE 428
>sp|P49586|PCY1A_MOUSE Choline-phosphate cytidylyltransferase A (Phosphorylcholine
transferase A) (CTP:phosphocholine cytidylyltransferase
A) (CT A) (CCT A) (CCT-alpha)
Length = 367
Score = 32.3 bits (72), Expect = 2.1
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +3
Query: 180 VQRGM---ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFS 350
+QRG EL+ S KKY L + +DK+K ++KD E S E V + VE+ ++ L
Sbjct: 221 LQRGYTAKELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEEKSIDLIQ 276
Query: 351 YADKKDKEGNFEQATIRSFMTSGFLMDVL 437
++K +E F + + F G L +L
Sbjct: 277 KWEEKSRE--FIGSFLEMFGPEGALKHML 303
>sp|P49584|PCY1A_CRIGR Choline-phosphate cytidylyltransferase A (Phosphorylcholine
transferase A) (CTP:phosphocholine cytidylyltransferase
A) (CT A) (CCT A) (CCT-alpha)
Length = 367
Score = 32.3 bits (72), Expect = 2.1
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +3
Query: 180 VQRGM---ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFS 350
+QRG EL+ S KKY L + +DK+K ++KD E S E V + VE+ ++ L
Sbjct: 221 LQRGYTAKELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEERSIDLIQ 276
Query: 351 YADKKDKEGNFEQATIRSFMTSGFLMDVL 437
++K +E F + + F G L +L
Sbjct: 277 TWEEKSRE--FIGSFLEMFGPEGALKHML 303
>sp|P19836|PCY1A_RAT Choline-phosphate cytidylyltransferase A (Phosphorylcholine
transferase A) (CTP:phosphocholine cytidylyltransferase
A) (CT A) (CCT A) (CCT-alpha)
Length = 367
Score = 32.3 bits (72), Expect = 2.1
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Frame = +3
Query: 180 VQRGM---ELDRSSTESKKYLMELMDNLDKMKNEMKDNESISSETVGQAHVEDYALRLFS 350
+QRG EL+ S KKY L + +DK+K ++KD E S E V + VE+ ++ L
Sbjct: 221 LQRGYTAKELNVSFINEKKY--HLQERVDKVKKKVKDVEEKSKEFVQK--VEEKSIDLIQ 276
Query: 351 YADKKDKEGNFEQATIRSFMTSGFLMDVL 437
++K +E F + + F G L +L
Sbjct: 277 KWEEKSRE--FIGSFLEMFGPEGALKHML 303
>sp|Q980W4|UPPS_SULSO Undecaprenyl pyrophosphate synthetase (UPP synthetase)
(Di-trans,poly-cis-decaprenylcistransferase)
(Undecaprenyl diphosphate synthase) (UDS)
Length = 262
Score = 32.3 bits (72), Expect = 2.1
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 2/166 (1%)
Frame = +3
Query: 90 KLKPLTTYLKTAAEVETRDPVV-AYYCRLYAVQRGMELDRSSTESKKYLMELMDNLDKMK 266
+L +TTY+K + DP+V Y ++ A+ + +L + + ++E N DK K
Sbjct: 96 ELSIITTYIKRGIQDLLEDPIVDKYEVKVSAIGKLDKLPKDLIDYLNRVVEKTSNYDKRK 155
Query: 267 NEMKDNESISSETVGQAHVEDYALRLF-SYADKKDKEGNFEQATIRSFMTSGFLMDVLSV 443
+++ G+ + D +RL Y + K + + T R + L D+ V
Sbjct: 156 ------LTLAICYGGRQEILDAVVRLLDDYRNGKIVKSEINEETFRKYFYDSELQDIDLV 209
Query: 444 FGEVGEDIEKCRKYAKWKAVYINQCLKKGEIPHSGPIDNDQEISDF 581
GE + + W Y + P ID + I F
Sbjct: 210 IRTSGE--VRISNFLLWHVAYSELFFCEAYWPEFRKIDLWRAIRSF 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,332,161
Number of Sequences: 369166
Number of extensions: 1882035
Number of successful extensions: 6302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6282
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10287619925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)