Planaria EST Database

DrC_01000

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01000
         (1096 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9U4L6|TOM40_DROME  Probable mitochondrial import recepto...   207   4e-53
sp|Q9QYA2|TOM40_MOUSE  Probable mitochondrial import recepto...   178   2e-44
sp|O96008|TOM40_HUMAN  Probable mitochondrial import recepto...   177   5e-44
sp|Q18090|TOM40_CAEEL  Probable mitochondrial import recepto...   171   4e-42
sp|O13656|TOM40_SCHPO  Probable mitochondrial import recepto...    76   1e-13
sp|P23644|TOM40_YEAST  Mitochondrial import receptor subunit...    55   4e-07
sp|Q9LHE5|TOM40_ARATH  Probable mitochondrial import recepto...    40   0.012
sp|Q59088|G6PI_ACIAD  Glucose-6-phosphate isomerase (GPI) (P...    32   3.2  
sp|P19812|UBR1_YEAST  Ubiquitin-protein ligase E3 component ...    31   5.5  
sp|O74161|CHS5_CANAL  Chitin biosynthesis protein CHS5             31   5.5  

>sp|Q9U4L6|TOM40_DROME Probable mitochondrial import receptor subunit TOM40 homolog
            (Translocase of outer membrane 40 kDa subunit homolog)
            (Male sterile protein 15)
          Length = 344

 Score =  207 bits (527), Expect = 4e-53
 Identities = 101/287 (35%), Positives = 167/287 (58%), Gaps = 2/287 (0%)
 Frame = +1

Query: 184  TMESLHNITHEIFPVPFEGVKLVVNQGFNQHFQLNHSFAFGSEKQSGYKFGATYVGNTKL 363
            T+E LH    +I  + FEG K+++N+G + HFQ++H+    +   SGY+FGATYVG  + 
Sbjct: 62   TVEELHKKCKDIQAITFEGAKIMLNKGLSNHFQVSHTINMSNVVPSGYRFGATYVGTKEF 121

Query: 364  SETEIYPIMLGELSPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQQFSIEHRNKNINL 543
            S TE +P++LG++ P GNLNA +IHQF+ +++CK+ SQ++  K+   Q + ++R  +  L
Sbjct: 122  SPTEAFPVLLGDIDPAGNLNANVIHQFSARLRCKFASQIQESKVVASQLTTDYRGSDYTL 181

Query: 544  GFSIVNPSIQNKEISCIFDVMRRITDKLSLGSMFVFQRSNQAQFTNFGVWNVGGQYVGNK 723
              ++ NPSI       +   ++ +T  L+LGS   +Q           + +V G+Y    
Sbjct: 182  SLTVANPSIFTNSGVVVGQYLQSVTPALALGSELAYQFGPNVPGRQIAIMSVVGRYTAGS 241

Query: 724  --WTAAVGVRPFQSSLHSTFHMKLNEAFQIGTEIETSLGHRQCVGTAGYQFDFPKSGITI 897
              W+  +G    QS LH  ++ K ++  QIG E+ETSL  ++ V T  YQ D PK+ +  
Sbjct: 242  SVWSGTLG----QSGLHVCYYQKASDQLQIGAEVETSLRMQESVATLAYQIDLPKANLVF 297

Query: 898  KSQVDSNWKIATSYERKFIAPIPFSINLCINGDIWKSNYGLGVGFSI 1038
            +  +DSNW+I    E++ +AP+PF++ L    +  K+N+ LG G  I
Sbjct: 298  RGGIDSNWQIFGVLEKR-LAPLPFTLALSGRMNHVKNNFRLGCGLMI 343

>sp|Q9QYA2|TOM40_MOUSE Probable mitochondrial import receptor subunit TOM40 homolog
            (Translocase of outer membrane 40 kDa subunit homolog)
          Length = 359

 Score =  178 bits (452), Expect = 2e-44
 Identities = 95/285 (33%), Positives = 155/285 (54%)
 Frame = +1

Query: 184  TMESLHNITHEIFPVPFEGVKLVVNQGFNQHFQLNHSFAFGSEKQSGYKFGATYVGNTKL 363
            T E  H    E+FPV  EGVKL VN+G +  FQ+ H+ A G+  +S Y FG TYVG  +L
Sbjct: 80   TFEECHRKCKELFPVQMEGVKLTVNKGLSNRFQVTHTVALGTIGESNYHFGVTYVGTKQL 139

Query: 364  SETEIYPIMLGELSPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQQFSIEHRNKNINL 543
            S TE +P+++G++  +G+LNAQ+IHQ +  ++ K   Q +  K    Q   E+R  +   
Sbjct: 140  SPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTA 199

Query: 544  GFSIVNPSIQNKEISCIFDVMRRITDKLSLGSMFVFQRSNQAQFTNFGVWNVGGQYVGNK 723
              ++ NP +       +   ++ IT  L+LG   V+ R    + T   V ++ G+Y  N 
Sbjct: 200  AVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRRPGEEGT---VMSLAGKYTLNN 256

Query: 724  WTAAVGVRPFQSSLHSTFHMKLNEAFQIGTEIETSLGHRQCVGTAGYQFDFPKSGITIKS 903
            W A V +   Q+ +H+T++ K ++  Q+G E E S   +    + GYQ D PK+    K 
Sbjct: 257  WLATVTLG--QAGMHATYYHKASDQLQVGVEFEASTRMQDTSASFGYQLDLPKANFLFKG 314

Query: 904  QVDSNWKIATSYERKFIAPIPFSINLCINGDIWKSNYGLGVGFSI 1038
             V+SNW +  + E+K + P+P +++LC   +  K+ +  G G +I
Sbjct: 315  SVNSNWIVGATLEKK-LPPLPLTLSLCAFLNHRKNKFLCGFGLTI 358

>sp|O96008|TOM40_HUMAN Probable mitochondrial import receptor subunit TOM40 homolog
            (Translocase of outer membrane 40 kDa subunit homolog)
            (Haymaker protein) (p38.5)
          Length = 361

 Score =  177 bits (449), Expect = 5e-44
 Identities = 95/285 (33%), Positives = 154/285 (54%)
 Frame = +1

Query: 184  TMESLHNITHEIFPVPFEGVKLVVNQGFNQHFQLNHSFAFGSEKQSGYKFGATYVGNTKL 363
            T E  H    E+FP+  EGVKL VN+G + HFQ+NH+ A  +  +S Y FG TYVG  +L
Sbjct: 82   TFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGESNYHFGVTYVGTKQL 141

Query: 364  SETEIYPIMLGELSPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQQFSIEHRNKNINL 543
            S TE +P+++G++  +G+LNAQ+IHQ    ++ K   Q +  K    Q   E+R  +   
Sbjct: 142  SPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTA 201

Query: 544  GFSIVNPSIQNKEISCIFDVMRRITDKLSLGSMFVFQRSNQAQFTNFGVWNVGGQYVGNK 723
              ++ NP +       +   ++ IT  L+LG   V+ R    + T   V ++ G+Y  N 
Sbjct: 202  AVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRRPGEEGT---VMSLAGKYTLNN 258

Query: 724  WTAAVGVRPFQSSLHSTFHMKLNEAFQIGTEIETSLGHRQCVGTAGYQFDFPKSGITIKS 903
            W A V +   Q+ +H+T++ K ++  Q+G E E S   +    + GYQ D PK+ +  K 
Sbjct: 259  WLATVTLG--QAGMHATYYHKASDQLQVGVEFEASTRMQDTSVSFGYQLDLPKANLLFKG 316

Query: 904  QVDSNWKIATSYERKFIAPIPFSINLCINGDIWKSNYGLGVGFSI 1038
             VDSNW +  + E+K + P+P ++ L    +  K+ +  G G +I
Sbjct: 317  SVDSNWIVGATLEKK-LPPLPLTLALGAFLNHRKNKFQCGFGLTI 360

>sp|Q18090|TOM40_CAEEL Probable mitochondrial import receptor subunit TOM40 homolog
            (Translocase of outer membrane 40 kDa subunit homolog)
          Length = 301

 Score =  171 bits (432), Expect = 4e-42
 Identities = 91/283 (32%), Positives = 151/283 (53%)
 Frame = +1

Query: 190  ESLHNITHEIFPVPFEGVKLVVNQGFNQHFQLNHSFAFGSEKQSGYKFGATYVGNTKLSE 369
            E LH    ++FP  FEG KL+VN+G + HFQ++H+ +  S   +GY+FGATYVG  ++  
Sbjct: 22   EELHRKARDVFPTCFEGAKLMVNKGLSSHFQVSHTLSL-SAMNTGYRFGATYVGTNQVGP 80

Query: 370  TEIYPIMLGELSPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQQFSIEHRNKNINLGF 549
             E YPI+LG+   NGN  A I+HQ     + K   Q++ GK+ G Q +IE + +   LG 
Sbjct: 81   AEAYPILLGDTDVNGNTTATILHQLGI-YRTKLQGQIQQGKLAGAQATIERKGRLSTLGL 139

Query: 550  SIVNPSIQNKEISCIFDVMRRITDKLSLGSMFVFQRSNQAQFTNFGVWNVGGQYVGNKWT 729
            ++ N  + N+    +   +RR+T +L +G+  V+Q           V +   +Y  N + 
Sbjct: 140  TLANIDLVNEAGILVGQFLRRLTPRLDVGTEMVYQYGKNIPGGQISVLSYAARYTANHFI 199

Query: 730  AAVGVRPFQSSLHSTFHMKLNEAFQIGTEIETSLGHRQCVGTAGYQFDFPKSGITIKSQV 909
            AA  +    S +H T++ K NE    G E E +    + V T  YQ + P+ G+T+++  
Sbjct: 200  AAATLGA--SGVHLTYYHKQNENLAFGVEFECNANVGEAVTTLAYQTELPEEGVTMRASF 257

Query: 910  DSNWKIATSYERKFIAPIPFSINLCINGDIWKSNYGLGVGFSI 1038
            D+NW +   +E++    +PF++ L    +  K+    G+G  I
Sbjct: 258  DTNWTVGGVFEKRLSQQLPFTLALSGTLNHVKAAGKFGIGLII 300

>sp|O13656|TOM40_SCHPO Probable mitochondrial import receptor subunit tom40 (Translocase of
            outer membrane 40 kDa subunit)
          Length = 344

 Score = 76.3 bits (186), Expect = 1e-13
 Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 17/286 (5%)
 Frame = +1

Query: 232  FEGVKLVVNQGF--NQHFQLNHSFAFGSEKQSGYKFGATYVGNTKLSETEIYPIML-GEL 402
            F GV+  V +GF  +  F ++H+FA GS+    Y F   + G          P+ L G +
Sbjct: 51   FTGVRADVTKGFCTSPWFTVSHAFALGSQVLPPYSFSTMFGGE---------PLFLRGSV 101

Query: 403  SPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQ-QFSIEHRNKNINLGFSIVNPSIQNK 579
              +G + A +   +N  +  K   Q+  G +    Q   +H+ K+ +  F  +NP  + K
Sbjct: 102  DNDGAVQAMLNCTWNSNVLSKVQMQLSNGAVPNMCQIEHDHKGKDFSFSFKAMNPWYEEK 161

Query: 580  EISC-IFDVMRRITDKLSLGSMFVFQRSNQAQFTNFGVWNVGGQYVGNKWTAAVGVRPFQ 756
                 I  +++ +T KLSLG   ++Q+ + +        +   +Y    W A   +   Q
Sbjct: 162  LTGIYIISLLQSVTPKLSLGVEALWQKPSSSIGPEEATLSYMTRYNAADWIATAHLNGSQ 221

Query: 757  SSLHSTFHMKLNEAFQIGTEIETS---LGHRQCVGT---------AGYQFDFPKSGITIK 900
              + +TF  KL+   + G E + S   L H   + T          G +++F +S    +
Sbjct: 222  GDVTATFWRKLSPKVEAGVECQLSPVGLNHSAALMTGPKPEGLTSVGVKYEFAQS--IYR 279

Query: 901  SQVDSNWKIATSYERKFIAPIPFSINLCINGDIWKSNYGLGVGFSI 1038
             QVDS  ++    ER+    I  + +  ++     +  GLG+   +
Sbjct: 280  GQVDSKGRVGVYLERRLAPAITLAFSSELDHPNRNAKVGLGLSLEL 325

>sp|P23644|TOM40_YEAST Mitochondrial import receptor subunit TOM40 (Mitochondrial
            import-site-protein ISP42) (Translocase of outer membrane
            40 kDa subunit)
          Length = 387

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 69/307 (22%), Positives = 138/307 (44%), Gaps = 25/307 (8%)
 Frame = +1

Query: 184  TMESLHN-ITHEIFPVP--FEGVKLVVNQGF--NQHFQLNHSFAFGSEKQSGYKFGATYV 348
            T+E+L+  ++ ++F     F G++  +N+ F  N  FQ +H+F+ GS+    Y F A + 
Sbjct: 62   TVENLNKEVSRDVFLSQYFFTGLRADLNKAFSMNPAFQTSHTFSIGSQALPKYAFSALFA 121

Query: 349  GNTKLSETEIYPIMLGELSPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQQFSIEHRN 528
             +   ++  I      +LS +G LN    + +++K   K   Q+  G+    Q   +++ 
Sbjct: 122  NDNLFAQGNID----NDLSVSGRLN----YGWDKKNISKVNLQISDGQPTMCQLEQDYQA 173

Query: 529  KNINLGFSIVNPSIQNK-EIS--CIFDVMRRITDKLSLGSMFVFQRSNQAQFTNFGV--- 690
             + ++    +NPS   K E +   +   ++ +T +L+LG   ++ R++ +   + GV   
Sbjct: 174  SDFSVNVKTLNPSFSEKGEFTGVAVASFLQSVTPQLALGLETLYSRTDGSAPGDAGVSYL 233

Query: 691  ---------WNVGGQYVGNKWTAAVGVRPFQSSLHSTFHMKLNEAFQIGTE--IETSLGH 837
                     W   GQ   N    A   R    ++ +     L       T+  + T +G 
Sbjct: 234  TRYVSKKQDWIFSGQLQANGALIASLWRKVAQNVEAGIETTLQAGMVPITDPLMGTPIGI 293

Query: 838  RQCV---GTAGYQFDFPKSGITIKSQVDSNWKIATSYERKFIAPIPFSINLCINGDIWKS 1008
            +  V    T G ++++ +S    +  +DSN K+A   ERK +  +  S+  C   D +K+
Sbjct: 294  QPTVEGSTTIGAKYEYRQS--VYRGTLDSNGKVACFLERKVLPTL--SVLFCGEIDHFKN 349

Query: 1009 NYGLGVG 1029
            +  +G G
Sbjct: 350  DTKIGCG 356

>sp|Q9LHE5|TOM40_ARATH Probable mitochondrial import receptor subunit TOM40 homolog
            (Translocase of outer membrane 40 kDa subunit homolog)
          Length = 309

 Score = 40.0 bits (92), Expect = 0.012
 Identities = 63/318 (19%), Positives = 124/318 (38%), Gaps = 21/318 (6%)
 Frame = +1

Query: 148  KMAESSDSKGLPT---MESLHN-ITHEIFPVPFEGVKLVVNQGFNQHFQLNHSFAFGSEK 315
            K+ E  D   LP+    E LH      +    FEG++    +  NQ F L+HS   G  +
Sbjct: 18   KVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDFTRALNQKFSLSHSVMMGPTE 77

Query: 316  -------------QSGYKFGATYVGNTKLSETEIYPIMLGELSPNGNLNAQIIHQFNQKI 456
                          + Y+FGA Y  + KL       +++G +  +G LNA++      K+
Sbjct: 78   VPAQSPETTIKIPTAHYEFGANYY-DPKL-------LLIGRVMTDGRLNARLKADLTDKL 129

Query: 457  KCKYVSQMKVGKIDGQQFSIEHRNK---NINLGFSIVNPSIQNKEISCI-FDVMRRITDK 624
                     V K +    + EH ++   N +   S     +Q  + + I    ++ +T+ 
Sbjct: 130  ---------VVKANALITNEEHMSQAMFNFDYMGSDYRAQLQLGQSALIGATYIQSVTNH 180

Query: 625  LSLGSMFVFQRSNQAQFTNFGVWNVGGQYVGNKWTAAVGVRPFQSSLHSTFHMKLNEAFQ 804
            LSLG    +    +     +       + V +   A+ G      ++   +  K+++   
Sbjct: 181  LSLGGEIFWAGVPRKSGIGYAARYETDKMVASGQVASTG------AVVMNYVQKISDKVS 234

Query: 805  IGTEIETSLGHRQCVGTAGYQFDFPKSGITIKSQVDSNWKIATSYERKFIAPIPFSINLC 984
            + T+   +   R    + GY  D+      ++ ++DSN   +   E +    + F ++  
Sbjct: 235  LATDFMYNYFSRDVTASVGY--DYMLRQARVRGKIDSNGVASALLEERLSMGLNFLLSAE 292

Query: 985  INGDIWKSNYGLGVGFSI 1038
            +  D  K +Y  G G ++
Sbjct: 293  L--DHKKKDYKFGFGLTV 308

>sp|Q59088|G6PI_ACIAD Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase)
           (PGI) (Phosphohexose isomerase) (PHI)
          Length = 557

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 352 NTKLSETEIYPIMLGELSPNG-NLNAQIIHQFNQKIKCKYVSQM 480
           N +  E    PI+ GE+ PN  +   Q++HQ  QK+ C +++ M
Sbjct: 370 NGQKVENTTCPIVWGEVGPNAQHAFYQLLHQGTQKVSCDFIAPM 413

>sp|P19812|UBR1_YEAST Ubiquitin-protein ligase E3 component N-recognin-1 (N-end-recognizing
            protein)
          Length = 1950

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 17/71 (23%), Positives = 35/71 (49%)
 Frame = -2

Query: 888  TRFREIKLITSCTHALTMTQTSLNFCTYLKCFIQLHVKS*M*RTLERPNSHCRSPFITHI 709
            T+ +EIKL    +  +      L+F   L C +++H+++      +  N +C  PF   +
Sbjct: 1676 TQSKEIKLREERSQHMKNADNRLDFKICLTCGVKVHLRADRHEMTKHLNKNCFKPFGAFL 1735

Query: 708  LPTNIPYTEIC 676
            +P +   +E+C
Sbjct: 1736 MPNS---SEVC 1743

>sp|O74161|CHS5_CANAL Chitin biosynthesis protein CHS5
          Length = 562

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 358 KLSETEIYPIMLGELSPNGNLNAQIIHQFNQKIKCKYVSQMKVGKIDGQQFSIEHRNK 531
           K+++     + LG+L+PN   N + I +  + +  KY  Q +V K+D   F     NK
Sbjct: 165 KMTDLSGITVCLGDLTPNDQFNKEDIEEALKNMGAKYPVQQQV-KVDTTHFLCTRENK 221

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,561,315
Number of Sequences: 369166
Number of extensions: 2680870
Number of successful extensions: 5593
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5580
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12011494320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01000

  1. Dr_sW_025_E06
  2. Dr_sW_013_C07
  3. Dr_sW_006_K05
  4. Dr_sW_014_K03