Planaria EST Database


DrC_00916

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00916
         (537 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P00443|SODC_HORSE  Superoxide dismutase [Cu-Zn]                213   3e-55
sp|O73872|SODC_BRARE  Superoxide dismutase [Cu-Zn]                213   3e-55
sp|P08228|SODC_MOUSE  Superoxide dismutase [Cu-Zn]                209   5e-54
sp|Q8HXQ0|SODC_MACMU  Superoxide dismutase [Cu-Zn] >gi|38503...   207   1e-53
sp|Q8HXP8|SODC_CALJA  Superoxide dismutase [Cu-Zn]                205   5e-53
sp|Q8HXQ3|SODC_HYLLA  Superoxide dismutase [Cu-Zn]                204   8e-53
sp|O65199|SODCP_VITVI  Superoxide dismutase [Cu-Zn], chlorop...   204   8e-53
sp|P07632|SODC_RAT  Superoxide dismutase [Cu-Zn]                  202   3e-52
sp|P41973|SODC_DROWI  Superoxide dismutase [Cu-Zn]                202   4e-52
sp|P00441|SODC_HUMAN  Superoxide dismutase [Cu-Zn] >gi|38503...   201   9e-52
>sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  213 bits (541), Expect = 3e-55
 Identities = 99/152 (65%), Positives = 117/152 (76%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M + AVCVLK +  ++G I F Q   GGPV L+  I GLT G+HGFH+HEFGDNT GC +
Sbjct: 1   MALKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTT 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AGAH+NP  K HG P DEERHVGDLGNVTAD NGK  V + D+VISL G +SIIGR++V+
Sbjct: 61  AGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGI 474
           HE +DDLGKGG+E S  TGNAG RLACGV+GI
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152
>sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  213 bits (541), Expect = 3e-55
 Identities = 97/154 (62%), Positives = 119/154 (77%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M   AVCVLK    + GT+ F+Q     PV++  EI+GLTPG HGFH+H FGDNTNGCIS
Sbjct: 1   MVNKAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCIS 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NPH KTHG P D  RHVGDLGNVTAD++G   +++ D +++L G +SIIGR++VI
Sbjct: 61  AGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVI 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE EDDLGKGG+E S  TGNAGGRLACGV+GIT+
Sbjct: 121 HEKEDDLGKGGNEESLKTGNAGGRLACGVIGITQ 154
>sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  209 bits (531), Expect = 5e-54
 Identities = 96/154 (62%), Positives = 116/154 (75%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M + AVCVLK +  + GTI F Q  SG PV L  +I+GLT G HGFH+H++GDNT GC S
Sbjct: 1   MAMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTS 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NPH K HG P DEERHVGDLGNVTA  +G  +V + D VISL G +SIIGR++V+
Sbjct: 61  AGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE +DDLGKGG+E S  TGNAG RLACGV+GI +
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|Q8HXQ0|SODC_MACMU Superoxide dismutase [Cu-Zn]
 sp|Q8HXQ2|SODC_MACFU Superoxide dismutase [Cu-Zn]
 sp|Q8HXQ1|SODC_MACFA Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  207 bits (528), Expect = 1e-53
 Identities = 97/154 (62%), Positives = 116/154 (75%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M + AVCVLK +  + GTI F Q +S GPV++   I+GLT G HGFH+H+FGDNT GC S
Sbjct: 1   MAMKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTS 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NP  + HG P DEERHVGDLGNVTA  +G   V   D+VISL G +SIIGR+LV+
Sbjct: 61  AGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE  DDLGKGG+E SK TGNAGGRLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESKKTGNAGGRLACGVIGIAQ 154
>sp|Q8HXP8|SODC_CALJA Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  205 bits (522), Expect = 5e-53
 Identities = 96/154 (62%), Positives = 116/154 (75%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M + AVCVLK +  + GTI F Q +S GPV++   I+GL  G HGFH+H+FGDNT GC S
Sbjct: 1   MAMKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTS 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NP  + HG P DEERHVGDLGNVTA  +G   V + D+VISL G +SIIGR+LV+
Sbjct: 61  AGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE  DDLGKGG+E SK TGNAGGRLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESKKTGNAGGRLACGVIGIAQ 154
>sp|Q8HXQ3|SODC_HYLLA Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  204 bits (520), Expect = 8e-53
 Identities = 95/154 (61%), Positives = 115/154 (74%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M + AVCVLK +  + G I F Q +S GPV++   I+GLT G HGFH+H+FGDNT GC S
Sbjct: 1   MAMKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTS 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NP  + HG P DEERHVGDLGNVTAD +G   V + D+VISL G +SIIGR+LV+
Sbjct: 61  AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE  DDLGKGG+E S  TGNAG RLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chloroplast precursor
          Length = 212

 Score =  204 bits (520), Expect = 8e-53
 Identities = 95/158 (60%), Positives = 117/158 (74%)
 Frame = +1

Query: 4   IQFLIMTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNT 183
           +  + +T  AV VLK   ++ G +  SQ D G P  + V I+GLTPGNHGFH+HEFGD T
Sbjct: 54  LSVVAVTKKAVAVLKGTSSVEGVVTLSQEDDG-PTTVSVRITGLTPGNHGFHLHEFGDTT 112

Query: 184 NGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIG 363
           NGC+S GAH+NP+G THGAP D+ RH GDLGN+ A++ G     + DT I L GP ++IG
Sbjct: 113 NGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIG 172

Query: 364 RSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVGIT 477
           R+LV+HE EDDLGKGGHE S TTGNAGGRLACGVVG+T
Sbjct: 173 RALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 210
>sp|P07632|SODC_RAT Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  202 bits (515), Expect = 3e-52
 Identities = 92/154 (59%), Positives = 114/154 (74%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M + AVCVLK +  + G I F Q  SG PV +  +I+GLT G HGFH+H++GDNT GC +
Sbjct: 1   MAMKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTT 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NPH K HG P DEERHVGDLGNV A  +G  +V + D VISL G +SIIGR++V+
Sbjct: 61  AGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE +DDLGKGG+E S  TGNAG RLACGV+GI +
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn]
          Length = 153

 Score =  202 bits (514), Expect = 4e-52
 Identities = 91/154 (59%), Positives = 117/154 (75%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M V AVCV+  +    GT+ F Q D+G PV++  E++GL  G HGFH+HEFGDNTNGC+S
Sbjct: 1   MVVKAVCVINGDAK--GTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMS 58

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           +G H+NPH K HGAP DE RH+GDLGN+ A  +G  +V ++D+ I+LVG  SIIGR++V+
Sbjct: 59  SGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVV 118

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           H + DDLGKGGHE SKTTGNAG R+ CGV+GI K
Sbjct: 119 HADPDDLGKGGHELSKTTGNAGARIGCGVIGIAK 152
>sp|P00441|SODC_HUMAN Superoxide dismutase [Cu-Zn]
 sp|P60052|SODC_PANTR Superoxide dismutase [Cu-Zn]
          Length = 154

 Score =  201 bits (511), Expect = 9e-52
 Identities = 95/154 (61%), Positives = 112/154 (72%)
 Frame = +1

Query: 19  MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 198
           M   AVCVLK +  + G I F Q +S GPV++   I GLT G HGFH+HEFGDNT GC S
Sbjct: 1   MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTS 60

Query: 199 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 378
           AG H+NP  + HG P DEERHVGDLGNVTAD +G   V + D+VISL G + IIGR+LV+
Sbjct: 61  AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV 120

Query: 379 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 480
           HE  DDLGKGG+E S  TGNAG RLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,614,808
Number of Sequences: 369166
Number of extensions: 1202170
Number of successful extensions: 3448
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3263
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00916

  1. Dr_sW_023_B05
  2. Dr_sW_018_H07
  3. Dr_sW_022_L10
  4. Dr_sW_012_L13
  5. Dr_sW_012_M21
  6. Dr_sW_010_D16