Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_L13
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn] 194 7e-50
sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn] 191 4e-49
sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chlorop... 190 1e-48
sp|P07505|SODCP_SPIOL Superoxide dismutase [Cu-Zn], chlorop... 186 2e-47
sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn] 185 3e-47
sp|P80174|SODC_CARCR Superoxide dismutase [Cu-Zn] 185 3e-47
sp|P11418|SODC_PRIGL Superoxide dismutase [Cu-Zn] 185 4e-47
sp|P10792|SODCP_PETHY Superoxide dismutase [Cu-Zn], chlorop... 184 5e-47
sp|P14831|SODCP_LYCES Superoxide dismutase [Cu-Zn], chlorop... 184 7e-47
sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn] 184 9e-47
>sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 194 bits (493), Expect = 7e-50
Identities = 86/126 (68%), Positives = 105/126 (83%)
Frame = +3
Query: 9 PVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNV 188
PV++ EI+GLTPG HGFH+H FGDNTNGCISAG H+NPH KTHG P D RHVGDLGNV
Sbjct: 29 PVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNV 88
Query: 189 TADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACG 368
TAD++G +++ D +++L G +SIIGR++VIHE EDDLGKGG+E S TGNAGGRLACG
Sbjct: 89 TADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACG 148
Query: 369 VVGITK 386
V+GIT+
Sbjct: 149 VIGITQ 154
>sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 191 bits (486), Expect = 4e-49
Identities = 88/126 (69%), Positives = 102/126 (80%)
Frame = +3
Query: 3 GGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLG 182
GGPV L+ I GLT G+HGFH+HEFGDNT GC +AGAH+NP K HG P DEERHVGDLG
Sbjct: 27 GGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLG 86
Query: 183 NVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLA 362
NVTAD NGK V + D+VISL G +SIIGR++V+HE +DDLGKGG+E S TGNAG RLA
Sbjct: 87 NVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLA 146
Query: 363 CGVVGI 380
CGV+GI
Sbjct: 147 CGVIGI 152
>sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 212
Score = 190 bits (483), Expect = 1e-48
Identities = 85/126 (67%), Positives = 101/126 (80%)
Frame = +3
Query: 6 GPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGN 185
GP + V I+GLTPGNHGFH+HEFGD TNGC+S GAH+NP+G THGAP D+ RH GDLGN
Sbjct: 85 GPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGN 144
Query: 186 VTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLAC 365
+ A++ G + DT I L GP ++IGR+LV+HE EDDLGKGGHE S TTGNAGGRLAC
Sbjct: 145 IIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLAC 204
Query: 366 GVVGIT 383
GVVG+T
Sbjct: 205 GVVGLT 210
>sp|P07505|SODCP_SPIOL Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 222
Score = 186 bits (471), Expect = 2e-47
Identities = 83/126 (65%), Positives = 97/126 (76%)
Frame = +3
Query: 6 GPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGN 185
GP + V ISGL PG HGFH+HEFGD TNGC+S G H+NP KTHGAP DE RH GDLGN
Sbjct: 95 GPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGN 154
Query: 186 VTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLAC 365
+ A+++G + D I L GP S++GR+LV+HE EDDLGKGGHE S TTGNAGGRLAC
Sbjct: 155 IVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLAC 214
Query: 366 GVVGIT 383
GVVG+T
Sbjct: 215 GVVGLT 220
>sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 185 bits (470), Expect = 3e-47
Identities = 83/128 (64%), Positives = 100/128 (78%)
Frame = +3
Query: 3 GGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLG 182
G PV L +I+GLT G HGFH+H++GDNT GC SAG H+NPH K HG P DEERHVGDLG
Sbjct: 27 GEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLG 86
Query: 183 NVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLA 362
NVTA +G +V + D VISL G +SIIGR++V+HE +DDLGKGG+E S TGNAG RLA
Sbjct: 87 NVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLA 146
Query: 363 CGVVGITK 386
CGV+GI +
Sbjct: 147 CGVIGIAQ 154
>sp|P80174|SODC_CARCR Superoxide dismutase [Cu-Zn]
Length = 166
Score = 185 bits (470), Expect = 3e-47
Identities = 86/127 (67%), Positives = 98/127 (77%)
Frame = +3
Query: 6 GPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGN 185
GPV L I+GLT G HGFH+HEFGDNTNGC SAGAH+NP GK HG P D ERHVGDLGN
Sbjct: 39 GPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGN 98
Query: 186 VTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLAC 365
V A+ G V + D++ISL G SIIGR++V+HE EDDLGKGG++ S TGNAG RLAC
Sbjct: 99 VIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLAC 158
Query: 366 GVVGITK 386
GVVGI K
Sbjct: 159 GVVGIAK 165
>sp|P11418|SODC_PRIGL Superoxide dismutase [Cu-Zn]
Length = 152
Score = 185 bits (469), Expect = 4e-47
Identities = 86/127 (67%), Positives = 96/127 (75%)
Frame = +3
Query: 6 GPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGN 185
GPV L+ I+GLTPG HGFH+H FGDNTNGCISAG HYNP K HG P DEERHVGDLGN
Sbjct: 25 GPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGN 84
Query: 186 VTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLAC 365
V A+ NG ++ D + L G SIIGR+LV+HE EDDLGKGG E S TGNAG RLAC
Sbjct: 85 VEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLAC 144
Query: 366 GVVGITK 386
GV+GI K
Sbjct: 145 GVIGIAK 151
>sp|P10792|SODCP_PETHY Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 219
Score = 184 bits (468), Expect = 5e-47
Identities = 83/126 (65%), Positives = 99/126 (78%)
Frame = +3
Query: 6 GPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGN 185
GP ++V I+GL PG HGFH+HEFGD TNGC+S G H+NP+G THGAP DE RH GDLGN
Sbjct: 92 GPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGN 151
Query: 186 VTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLAC 365
+ A+++G L D I L GP S++GR+LV+HE EDDLGKGGHE S TTGNAGGRLAC
Sbjct: 152 IEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLAC 211
Query: 366 GVVGIT 383
GVVG+T
Sbjct: 212 GVVGLT 217
>sp|P14831|SODCP_LYCES Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 217
Score = 184 bits (467), Expect = 7e-47
Identities = 83/126 (65%), Positives = 99/126 (78%)
Frame = +3
Query: 6 GPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGN 185
GP + V I+GL PG HGFH+HE+GD TNGC+S GAH+NP+ THGAP DE RH GDLGN
Sbjct: 90 GPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGN 149
Query: 186 VTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLAC 365
+ A+++G V L D I L GP S++GR+LV+HE EDDLGKGGHE S TTGNAGGRLAC
Sbjct: 150 IVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLAC 209
Query: 366 GVVGIT 383
GVVG+T
Sbjct: 210 GVVGLT 215
>sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn]
Length = 153
Score = 184 bits (466), Expect = 9e-47
Identities = 80/128 (62%), Positives = 102/128 (79%)
Frame = +3
Query: 3 GGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLG 182
G PV++ E++GL G HGFH+HEFGDNTNGC+S+G H+NPH K HGAP DE RH+GDLG
Sbjct: 25 GAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLG 84
Query: 183 NVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLA 362
N+ A +G +V ++D+ I+LVG SIIGR++V+H + DDLGKGGHE SKTTGNAG R+
Sbjct: 85 NIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIG 144
Query: 363 CGVVGITK 386
CGV+GI K
Sbjct: 145 CGVIGIAK 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,167,345
Number of Sequences: 369166
Number of extensions: 974482
Number of successful extensions: 2833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2699
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)