Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_L10
(506 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn] 212 4e-55
sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn] 211 1e-54
sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn] 207 1e-53
sp|Q8HXQ0|SODC_MACMU Superoxide dismutase [Cu-Zn] >gi|38503... 206 3e-53
sp|Q8HXP8|SODC_CALJA Superoxide dismutase [Cu-Zn] 203 2e-52
sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chlorop... 203 2e-52
sp|Q8HXQ3|SODC_HYLLA Superoxide dismutase [Cu-Zn] 202 3e-52
sp|P07632|SODC_RAT Superoxide dismutase [Cu-Zn] 201 1e-51
sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn] 200 1e-51
sp|P14831|SODCP_LYCES Superoxide dismutase [Cu-Zn], chlorop... 199 2e-51
>sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 212 bits (540), Expect = 4e-55
Identities = 96/150 (64%), Positives = 118/150 (78%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + GT+ F+Q PV++ EI+GLTPG HGFH+H FGDNTNGCISAG H
Sbjct: 5 AVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NPH KTHG P D RHVGDLGNVTAD++G +++ D +++L G +SIIGR++VIHE E
Sbjct: 65 FNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHEKE 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGITK 459
DDLGKGG+E S TGNAGGRLACGV+GIT+
Sbjct: 125 DDLGKGGNEESLKTGNAGGRLACGVIGITQ 154
>sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 211 bits (536), Expect = 1e-54
Identities = 98/148 (66%), Positives = 115/148 (77%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + ++G I F Q GGPV L+ I GLT G+HGFH+HEFGDNT GC +AGAH
Sbjct: 5 AVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NP K HG P DEERHVGDLGNVTAD NGK V + D+VISL G +SIIGR++V+HE +
Sbjct: 65 FNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHEKQ 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGI 453
DDLGKGG+E S TGNAG RLACGV+GI
Sbjct: 125 DDLGKGGNEESTKTGNAGSRLACGVIGI 152
>sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 207 bits (526), Expect = 1e-53
Identities = 95/150 (63%), Positives = 114/150 (76%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + + GTI F Q SG PV L +I+GLT G HGFH+H++GDNT GC SAG H
Sbjct: 5 AVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NPH K HG P DEERHVGDLGNVTA +G +V + D VISL G +SIIGR++V+HE +
Sbjct: 65 FNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQ 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGITK 459
DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 125 DDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|Q8HXQ0|SODC_MACMU Superoxide dismutase [Cu-Zn]
sp|Q8HXQ2|SODC_MACFU Superoxide dismutase [Cu-Zn]
sp|Q8HXQ1|SODC_MACFA Superoxide dismutase [Cu-Zn]
Length = 154
Score = 206 bits (523), Expect = 3e-53
Identities = 96/150 (64%), Positives = 114/150 (76%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + + GTI F Q +S GPV++ I+GLT G HGFH+H+FGDNT GC SAG H
Sbjct: 5 AVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NP + HG P DEERHVGDLGNVTA +G V D+VISL G +SIIGR+LV+HE
Sbjct: 65 FNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHEKA 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGITK 459
DDLGKGG+E SK TGNAGGRLACGV+GI +
Sbjct: 125 DDLGKGGNEESKKTGNAGGRLACGVIGIAQ 154
>sp|Q8HXP8|SODC_CALJA Superoxide dismutase [Cu-Zn]
Length = 154
Score = 203 bits (517), Expect = 2e-52
Identities = 95/150 (63%), Positives = 114/150 (76%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + + GTI F Q +S GPV++ I+GL G HGFH+H+FGDNT GC SAG H
Sbjct: 5 AVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NP + HG P DEERHVGDLGNVTA +G V + D+VISL G +SIIGR+LV+HE
Sbjct: 65 FNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKA 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGITK 459
DDLGKGG+E SK TGNAGGRLACGV+GI +
Sbjct: 125 DDLGKGGNEESKKTGNAGGRLACGVIGIAQ 154
>sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 212
Score = 203 bits (516), Expect = 2e-52
Identities = 94/149 (63%), Positives = 113/149 (75%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AV VLK ++ G + SQ D G P + V I+GLTPGNHGFH+HEFGD TNGC+S GAH
Sbjct: 63 AVAVLKGTSSVEGVVTLSQEDDG-PTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAH 121
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NP+G THGAP D+ RH GDLGN+ A++ G + DT I L GP ++IGR+LV+HE E
Sbjct: 122 FNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELE 181
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGIT 456
DDLGKGGHE S TTGNAGGRLACGVVG+T
Sbjct: 182 DDLGKGGHELSLTTGNAGGRLACGVVGLT 210
>sp|Q8HXQ3|SODC_HYLLA Superoxide dismutase [Cu-Zn]
Length = 154
Score = 202 bits (515), Expect = 3e-52
Identities = 94/150 (62%), Positives = 113/150 (75%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + + G I F Q +S GPV++ I+GLT G HGFH+H+FGDNT GC SAG H
Sbjct: 5 AVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NP + HG P DEERHVGDLGNVTAD +G V + D+VISL G +SIIGR+LV+HE
Sbjct: 65 FNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKA 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGITK 459
DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 125 DDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|P07632|SODC_RAT Superoxide dismutase [Cu-Zn]
Length = 154
Score = 201 bits (510), Expect = 1e-51
Identities = 91/150 (60%), Positives = 112/150 (74%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AVCVLK + + G I F Q SG PV + +I+GLT G HGFH+H++GDNT GC +AG H
Sbjct: 5 AVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPH 64
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NPH K HG P DEERHVGDLGNV A +G +V + D VISL G +SIIGR++V+HE +
Sbjct: 65 FNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQ 124
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGITK 459
DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 125 DDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn]
Length = 153
Score = 200 bits (509), Expect = 1e-51
Identities = 90/152 (59%), Positives = 116/152 (76%)
Frame = +1
Query: 4 VHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAG 183
V AVCV+ + GT+ F Q D+G PV++ E++GL G HGFH+HEFGDNTNGC+S+G
Sbjct: 3 VKAVCVINGDAK--GTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSG 60
Query: 184 AHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHE 363
H+NPH K HGAP DE RH+GDLGN+ A +G +V ++D+ I+LVG SIIGR++V+H
Sbjct: 61 PHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVHA 120
Query: 364 NEDDLGKGGHETSKTTGNAGGRLACGVVGITK 459
+ DDLGKGGHE SKTTGNAG R+ CGV+GI K
Sbjct: 121 DPDDLGKGGHELSKTTGNAGARIGCGVIGIAK 152
>sp|P14831|SODCP_LYCES Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 217
Score = 199 bits (507), Expect = 2e-51
Identities = 93/149 (62%), Positives = 112/149 (75%)
Frame = +1
Query: 10 AVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAH 189
AV VLK N+ G + SQ+D G P + V I+GL PG HGFH+HE+GD TNGC+S GAH
Sbjct: 68 AVAVLKGNSNVEGVVTLSQDDDG-PTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAH 126
Query: 190 YNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENE 369
+NP+ THGAP DE RH GDLGN+ A+++G V L D I L GP S++GR+LV+HE E
Sbjct: 127 FNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELE 186
Query: 370 DDLGKGGHETSKTTGNAGGRLACGVVGIT 456
DDLGKGGHE S TTGNAGGRLACGVVG+T
Sbjct: 187 DDLGKGGHELSLTTGNAGGRLACGVVGLT 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,083,810
Number of Sequences: 369166
Number of extensions: 1160803
Number of successful extensions: 3399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3214
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)