Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_H07
(515 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn] 213 3e-55
sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn] 213 3e-55
sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn] 209 4e-54
sp|Q8HXQ0|SODC_MACMU Superoxide dismutase [Cu-Zn] >gi|38503... 207 9e-54
sp|Q8HXP8|SODC_CALJA Superoxide dismutase [Cu-Zn] 205 5e-53
sp|Q8HXQ3|SODC_HYLLA Superoxide dismutase [Cu-Zn] 204 8e-53
sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chlorop... 204 1e-52
sp|P07632|SODC_RAT Superoxide dismutase [Cu-Zn] 202 3e-52
sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn] 202 4e-52
sp|P00441|SODC_HUMAN Superoxide dismutase [Cu-Zn] >gi|38503... 201 9e-52
>sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 213 bits (541), Expect = 3e-55
Identities = 99/152 (65%), Positives = 117/152 (76%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M + AVCVLK + ++G I F Q GGPV L+ I GLT G+HGFH+HEFGDNT GC +
Sbjct: 1 MALKAVCVLKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTT 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AGAH+NP K HG P DEERHVGDLGNVTAD NGK V + D+VISL G +SIIGR++V+
Sbjct: 61 AGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGI 462
HE +DDLGKGG+E S TGNAG RLACGV+GI
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152
>sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 213 bits (541), Expect = 3e-55
Identities = 97/154 (62%), Positives = 119/154 (77%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M AVCVLK + GT+ F+Q PV++ EI+GLTPG HGFH+H FGDNTNGCIS
Sbjct: 1 MVNKAVCVLKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCIS 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NPH KTHG P D RHVGDLGNVTAD++G +++ D +++L G +SIIGR++VI
Sbjct: 61 AGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVI 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE EDDLGKGG+E S TGNAGGRLACGV+GIT+
Sbjct: 121 HEKEDDLGKGGNEESLKTGNAGGRLACGVIGITQ 154
>sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 209 bits (531), Expect = 4e-54
Identities = 96/154 (62%), Positives = 116/154 (75%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M + AVCVLK + + GTI F Q SG PV L +I+GLT G HGFH+H++GDNT GC S
Sbjct: 1 MAMKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTS 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NPH K HG P DEERHVGDLGNVTA +G +V + D VISL G +SIIGR++V+
Sbjct: 61 AGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE +DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|Q8HXQ0|SODC_MACMU Superoxide dismutase [Cu-Zn]
sp|Q8HXQ2|SODC_MACFU Superoxide dismutase [Cu-Zn]
sp|Q8HXQ1|SODC_MACFA Superoxide dismutase [Cu-Zn]
Length = 154
Score = 207 bits (528), Expect = 9e-54
Identities = 97/154 (62%), Positives = 116/154 (75%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M + AVCVLK + + GTI F Q +S GPV++ I+GLT G HGFH+H+FGDNT GC S
Sbjct: 1 MAMKAVCVLKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTS 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NP + HG P DEERHVGDLGNVTA +G V D+VISL G +SIIGR+LV+
Sbjct: 61 AGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE DDLGKGG+E SK TGNAGGRLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESKKTGNAGGRLACGVIGIAQ 154
>sp|Q8HXP8|SODC_CALJA Superoxide dismutase [Cu-Zn]
Length = 154
Score = 205 bits (522), Expect = 5e-53
Identities = 96/154 (62%), Positives = 116/154 (75%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M + AVCVLK + + GTI F Q +S GPV++ I+GL G HGFH+H+FGDNT GC S
Sbjct: 1 MAMKAVCVLKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTS 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NP + HG P DEERHVGDLGNVTA +G V + D+VISL G +SIIGR+LV+
Sbjct: 61 AGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE DDLGKGG+E SK TGNAGGRLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESKKTGNAGGRLACGVIGIAQ 154
>sp|Q8HXQ3|SODC_HYLLA Superoxide dismutase [Cu-Zn]
Length = 154
Score = 204 bits (520), Expect = 8e-53
Identities = 95/154 (61%), Positives = 115/154 (74%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M + AVCVLK + + G I F Q +S GPV++ I+GLT G HGFH+H+FGDNT GC S
Sbjct: 1 MAMKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTS 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NP + HG P DEERHVGDLGNVTAD +G V + D+VISL G +SIIGR+LV+
Sbjct: 61 AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 212
Score = 204 bits (519), Expect = 1e-52
Identities = 95/153 (62%), Positives = 115/153 (75%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
+T AV VLK ++ G + SQ D G P + V I+GLTPGNHGFH+HEFGD TNGC+S
Sbjct: 59 VTKKAVAVLKGTSSVEGVVTLSQEDDG-PTTVSVRITGLTPGNHGFHLHEFGDTTNGCMS 117
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
GAH+NP+G THGAP D+ RH GDLGN+ A++ G + DT I L GP ++IGR+LV+
Sbjct: 118 TGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVV 177
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGIT 465
HE EDDLGKGGHE S TTGNAGGRLACGVVG+T
Sbjct: 178 HELEDDLGKGGHELSLTTGNAGGRLACGVVGLT 210
>sp|P07632|SODC_RAT Superoxide dismutase [Cu-Zn]
Length = 154
Score = 202 bits (515), Expect = 3e-52
Identities = 92/154 (59%), Positives = 114/154 (74%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M + AVCVLK + + G I F Q SG PV + +I+GLT G HGFH+H++GDNT GC +
Sbjct: 1 MAMKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTT 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NPH K HG P DEERHVGDLGNV A +G +V + D VISL G +SIIGR++V+
Sbjct: 61 AGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE +DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 121 HEKQDDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
>sp|P41973|SODC_DROWI Superoxide dismutase [Cu-Zn]
Length = 153
Score = 202 bits (514), Expect = 4e-52
Identities = 91/154 (59%), Positives = 117/154 (75%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M V AVCV+ + GT+ F Q D+G PV++ E++GL G HGFH+HEFGDNTNGC+S
Sbjct: 1 MVVKAVCVINGDAK--GTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMS 58
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
+G H+NPH K HGAP DE RH+GDLGN+ A +G +V ++D+ I+LVG SIIGR++V+
Sbjct: 59 SGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVV 118
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
H + DDLGKGGHE SKTTGNAG R+ CGV+GI K
Sbjct: 119 HADPDDLGKGGHELSKTTGNAGARIGCGVIGIAK 152
>sp|P00441|SODC_HUMAN Superoxide dismutase [Cu-Zn]
sp|P60052|SODC_PANTR Superoxide dismutase [Cu-Zn]
Length = 154
Score = 201 bits (511), Expect = 9e-52
Identities = 95/154 (61%), Positives = 112/154 (72%)
Frame = +1
Query: 7 MTVHAVCVLKNEQNLNGTIKFSQNDSGGPVELEVEISGLTPGNHGFHIHEFGDNTNGCIS 186
M AVCVLK + + G I F Q +S GPV++ I GLT G HGFH+HEFGDNT GC S
Sbjct: 1 MATKAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTS 60
Query: 187 AGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGKVSVKLSDTVISLVGPYSIIGRSLVI 366
AG H+NP + HG P DEERHVGDLGNVTAD +G V + D+VISL G + IIGR+LV+
Sbjct: 61 AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV 120
Query: 367 HENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 468
HE DDLGKGG+E S TGNAG RLACGV+GI +
Sbjct: 121 HEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,050,771
Number of Sequences: 369166
Number of extensions: 1196671
Number of successful extensions: 3404
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3242
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)