Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_M21
(440 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn] 191 8e-49
sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chlorop... 186 3e-47
sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn] 184 1e-46
sp|P81926|SODC_HALRO Superoxide dismutase [Cu-Zn] 182 2e-46
sp|P07505|SODCP_SPIOL Superoxide dismutase [Cu-Zn], chlorop... 181 6e-46
sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn] 180 1e-45
sp|O65198|SODCP_MEDSA Superoxide dismutase [Cu-Zn], chlorop... 180 1e-45
sp|P10792|SODCP_PETHY Superoxide dismutase [Cu-Zn], chlorop... 180 1e-45
sp|P14831|SODCP_LYCES Superoxide dismutase [Cu-Zn], chlorop... 179 2e-45
sp|P80174|SODC_CARCR Superoxide dismutase [Cu-Zn] 179 2e-45
>sp|O73872|SODC_BRARE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 191 bits (484), Expect = 8e-49
Identities = 84/120 (70%), Positives = 101/120 (84%)
Frame = +3
Query: 27 EISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNG 206
EI+GLTPG HGFH+H FGDNTNGCISAG H+NPH KTHG P D RHVGDLGNVTAD++G
Sbjct: 35 EITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASG 94
Query: 207 KVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVGITK 386
+++ D +++L G +SIIGR++VIHE EDDLGKGG+E S TGNAGGRLACGV+GIT+
Sbjct: 95 VAKIEIEDAMLTLSGQHSIIGRTMVIHEKEDDLGKGGNEESLKTGNAGGRLACGVIGITQ 154
>sp|O65199|SODCP_VITVI Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 212
Score = 186 bits (471), Expect = 3e-47
Identities = 83/122 (68%), Positives = 99/122 (81%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
+ V I+GLTPGNHGFH+HEFGD TNGC+S GAH+NP+G THGAP D+ RH GDLGN+ A+
Sbjct: 89 VSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIAN 148
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
+ G + DT I L GP ++IGR+LV+HE EDDLGKGGHE S TTGNAGGRLACGVVG
Sbjct: 149 AEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 208
Query: 378 IT 383
+T
Sbjct: 209 LT 210
>sp|P00443|SODC_HORSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 184 bits (466), Expect = 1e-46
Identities = 83/117 (70%), Positives = 96/117 (82%)
Frame = +3
Query: 30 ISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTADSNGK 209
I GLT G+HGFH+HEFGDNT GC +AGAH+NP K HG P DEERHVGDLGNVTAD NGK
Sbjct: 36 IEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGK 95
Query: 210 VSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVGI 380
V + D+VISL G +SIIGR++V+HE +DDLGKGG+E S TGNAG RLACGV+GI
Sbjct: 96 ADVDMKDSVISLSGKHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152
>sp|P81926|SODC_HALRO Superoxide dismutase [Cu-Zn]
Length = 151
Score = 182 bits (463), Expect = 2e-46
Identities = 81/123 (65%), Positives = 101/123 (82%)
Frame = +3
Query: 12 CELEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVT 191
C + E+SGL PG HGFHIHE+GD TNGC S+G H+NP + HGAP D+ RHVGDLGN+T
Sbjct: 26 CTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNIT 85
Query: 192 ADSNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGV 371
ADS+G +V ++D +ISL G +SIIGR++V+H EDDLGKGGHE SKTTG+AGGRL+CGV
Sbjct: 86 ADSSGVATVNITDRMISLTGEHSIIGRAVVVHAGEDDLGKGGHEDSKTTGHAGGRLSCGV 145
Query: 372 VGI 380
+GI
Sbjct: 146 IGI 148
>sp|P07505|SODCP_SPIOL Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 222
Score = 181 bits (459), Expect = 6e-46
Identities = 81/122 (66%), Positives = 95/122 (77%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
+ V ISGL PG HGFH+HEFGD TNGC+S G H+NP KTHGAP DE RH GDLGN+ A+
Sbjct: 99 VNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVAN 158
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
++G + D I L GP S++GR+LV+HE EDDLGKGGHE S TTGNAGGRLACGVVG
Sbjct: 159 TDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVG 218
Query: 378 IT 383
+T
Sbjct: 219 LT 220
>sp|P08228|SODC_MOUSE Superoxide dismutase [Cu-Zn]
Length = 154
Score = 180 bits (457), Expect = 1e-45
Identities = 80/123 (65%), Positives = 97/123 (78%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
L +I+GLT G HGFH+H++GDNT GC SAG H+NPH K HG P DEERHVGDLGNVTA
Sbjct: 32 LSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAG 91
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
+G +V + D VISL G +SIIGR++V+HE +DDLGKGG+E S TGNAG RLACGV+G
Sbjct: 92 KDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIG 151
Query: 378 ITK 386
I +
Sbjct: 152 IAQ 154
>sp|O65198|SODCP_MEDSA Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 202
Score = 180 bits (457), Expect = 1e-45
Identities = 82/122 (67%), Positives = 96/122 (78%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
+ V I+GLTPG HGFH+HE+GD TNGCIS G H+NP+ THGAP DE RH GDLGN+ AD
Sbjct: 79 VNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIAD 138
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
+NG + D I L GP S+IGR+LV+HE EDDLGKGGHE S +TGNAGGRLACGVVG
Sbjct: 139 ANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVG 198
Query: 378 IT 383
+T
Sbjct: 199 LT 200
>sp|P10792|SODCP_PETHY Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 219
Score = 180 bits (456), Expect = 1e-45
Identities = 81/122 (66%), Positives = 97/122 (79%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
++V I+GL PG HGFH+HEFGD TNGC+S G H+NP+G THGAP DE RH GDLGN+ A+
Sbjct: 96 VKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEAN 155
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
++G L D I L GP S++GR+LV+HE EDDLGKGGHE S TTGNAGGRLACGVVG
Sbjct: 156 ASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 215
Query: 378 IT 383
+T
Sbjct: 216 LT 217
>sp|P14831|SODCP_LYCES Superoxide dismutase [Cu-Zn], chloroplast precursor
Length = 217
Score = 179 bits (455), Expect = 2e-45
Identities = 81/122 (66%), Positives = 97/122 (79%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
+ V I+GL PG HGFH+HE+GD TNGC+S GAH+NP+ THGAP DE RH GDLGN+ A+
Sbjct: 94 VNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVAN 153
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
++G V L D I L GP S++GR+LV+HE EDDLGKGGHE S TTGNAGGRLACGVVG
Sbjct: 154 ADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVG 213
Query: 378 IT 383
+T
Sbjct: 214 LT 215
>sp|P80174|SODC_CARCR Superoxide dismutase [Cu-Zn]
Length = 166
Score = 179 bits (454), Expect = 2e-45
Identities = 83/123 (67%), Positives = 95/123 (77%)
Frame = +3
Query: 18 LEVEISGLTPGNHGFHIHEFGDNTNGCISAGAHYNPHGKTHGAPCDEERHVGDLGNVTAD 197
L I+GLT G HGFH+HEFGDNTNGC SAGAH+NP GK HG P D ERHVGDLGNV A+
Sbjct: 43 LSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIAN 102
Query: 198 SNGKVSVKLSDTVISLVGPYSIIGRSLVIHENEDDLGKGGHETSKTTGNAGGRLACGVVG 377
G V + D++ISL G SIIGR++V+HE EDDLGKGG++ S TGNAG RLACGVVG
Sbjct: 103 KEGVAEVCIKDSLISLTGSQSIIGRTMVVHEKEDDLGKGGNDESLKTGNAGSRLACGVVG 162
Query: 378 ITK 386
I K
Sbjct: 163 IAK 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,799,951
Number of Sequences: 369166
Number of extensions: 1015426
Number of successful extensions: 2737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2631
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)