Planaria EST Database

DrC_00886

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00886
         (995 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JKK7|TMOD2_MOUSE  Tropomodulin-2 (Neuronal tropomodulin...   134   4e-31
sp|P70566|TMOD2_RAT  Tropomodulin-2 (Neuronal tropomodulin) ...   134   5e-31
sp|P49813|TMOD1_MOUSE  Tropomodulin-1 (Erythrocyte tropomodu...   132   2e-30
sp|P70567|TMOD1_RAT  Tropomodulin-1 (Erythrocyte tropomoduli...   130   8e-30
sp|Q9NZR1|TMOD2_HUMAN  Tropomodulin-2 (Neuronal tropomodulin...   129   1e-29
sp|P28289|TMOD1_HUMAN  Tropomodulin-1 (Erythrocyte tropomodu...   129   1e-29
sp|Q9JHJ0|TMOD3_MOUSE  Tropomodulin-3 (Ubiquitous tropomodul...   122   2e-27
sp|Q9NYL9|TMOD3_HUMAN  Tropomodulin-3 (Ubiquitous tropomodul...   121   4e-27
sp|Q9JLH8|TMOD4_MOUSE  Tropomodulin-4 (Skeletal muscle tropo...   118   3e-26
sp|Q9NZQ9|TMOD4_HUMAN  Tropomodulin-4 (Skeletal muscle tropo...   115   3e-25

>sp|Q9JKK7|TMOD2_MOUSE Tropomodulin-2 (Neuronal tropomodulin) (N-Tmod)
          Length = 351

 Score =  134 bits (337), Expect = 4e-31
 Identities = 79/226 (34%), Positives = 126/226 (55%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYHASVENKEQMCGGFQGVAKYESCKPV 224
           D E +EAL +A++ EL DLAAVLG + +LN  ++     N +   G  + V K E  KPV
Sbjct: 116 DPELEEALASASDTELYDLAAVLGVHNLLNNPKFDEETTNGQGRKGPVRNVVKGEKAKPV 175

Query: 225 PDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXXXXXXX 404
            +EP N T+VE+ +++++AND SL+EVNLNN+KNI    +K   +               
Sbjct: 176 FEEPPNPTNVEASLQQMKANDPSLQEVNLNNIKNIPIPTLKEFAKSLETNTHVKKFSLAA 235

Query: 405 IGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRVVNQQQ 584
              ++     F  +L+ N  L++LN+ESN++ G  I+ L+ A+ RE   L E+++ NQ+Q
Sbjct: 236 TRSNDPVALAFAEMLKVNKTLKSLNVESNFITGTGILALVEAL-RENDTLTEIKIDNQRQ 294

Query: 585 KVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVD 722
           + LG  VE EI ++++EN+ +   G        R R+   +  N D
Sbjct: 295 Q-LGTAVEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNND 339

>sp|P70566|TMOD2_RAT Tropomodulin-2 (Neuronal tropomodulin) (N-Tmod)
          Length = 351

 Score =  134 bits (336), Expect = 5e-31
 Identities = 79/226 (34%), Positives = 126/226 (55%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYHASVENKEQMCGGFQGVAKYESCKPV 224
           D E +EAL +A++ EL DLAAVLG + +LN  ++     N +   G  + V K E  KPV
Sbjct: 116 DPELEEALASASDTELYDLAAVLGVHNLLNNPKFDEETTNGQGRKGPVRNVVKGEKAKPV 175

Query: 225 PDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXXXXXXX 404
            +EP N T+VE+ +++++AND SL+EVNLNN+KNI    +K   +               
Sbjct: 176 FEEPPNPTNVEASLQQMKANDPSLQEVNLNNIKNIPIPTLKEFAKALETNTHVRKFSLAA 235

Query: 405 IGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRVVNQQQ 584
              ++     F  +L+ N  L++LN+ESN++ G  I+ L+ A+ RE   L E+++ NQ+Q
Sbjct: 236 TRSNDPVALAFAEMLKVNKTLKSLNVESNFITGAGILALVEAL-RENDTLTEIKIDNQRQ 294

Query: 585 KVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVD 722
           + LG  VE EI ++++EN+ +   G        R R+   +  N D
Sbjct: 295 Q-LGTAVEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNND 339

>sp|P49813|TMOD1_MOUSE Tropomodulin-1 (Erythrocyte tropomodulin) (E-Tmod)
          Length = 359

 Score =  132 bits (331), Expect = 2e-30
 Identities = 84/241 (34%), Positives = 132/241 (54%), Gaps = 5/241 (2%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYH-----ASVENKEQMCGGFQGVAKYE 209
           + E +EAL NA++ EL D+AA+LG + +++  QY+     +S+ NKE    G   V K  
Sbjct: 113 EPELEEALANASDAELCDIAAILGMHTLMSNQQYYQALGSSSIVNKE----GLNSVIKPT 168

Query: 210 SCKPVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXX 389
             KPVPDE  N TDVE  +++++ ND  L+EVNLNN++NI    +K   E          
Sbjct: 169 QYKPVPDEEPNSTDVEETLERIKNNDPELEEVNLNNIRNIPIPTLKAYAEALKENSYVKK 228

Query: 390 XXXXXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRV 569
                   ++        +L+ N  L+TLN+ESN+++G  I++L+ A+    S L+EL++
Sbjct: 229 FSIVGTRSNDPVAFALAEMLKVNKVLKTLNVESNFISGAGILRLVEALPHNTS-LVELKI 287

Query: 570 VNQQQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQNRLV 749
            NQ Q  LG +VE EI  ++++NTTL   G        R+R  + +  N D   R+ RL 
Sbjct: 288 DNQSQP-LGNKVEMEIVNMLEKNTTLLKFGYHFTQQGPRLRASNAMMSNND-LVRKRRLA 345

Query: 750 N 752
           +
Sbjct: 346 D 346

>sp|P70567|TMOD1_RAT Tropomodulin-1 (Erythrocyte tropomodulin) (E-Tmod)
          Length = 359

 Score =  130 bits (326), Expect = 8e-30
 Identities = 84/241 (34%), Positives = 132/241 (54%), Gaps = 5/241 (2%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYH-----ASVENKEQMCGGFQGVAKYE 209
           + E +EAL NA++ EL D+AA+LG + +++  QY+     +S+ NKE    G   V K  
Sbjct: 113 EPELEEALANASDAELCDIAAILGMHTLMSNQQYYQALGSSSIVNKE----GLNSVIKPT 168

Query: 210 SCKPVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXX 389
             KPVPDE  N TDVE  +++++ ND  L+EVNLNN++NI    +K   E          
Sbjct: 169 QYKPVPDEEPNPTDVEETLERIKNNDPELEEVNLNNIRNIPIPTLKAYAESLKENSYVKK 228

Query: 390 XXXXXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRV 569
                   ++        +L+ N  L+TLN+ESN+++G  I+ L+ A+    S L+EL++
Sbjct: 229 FSIVGTRSNDPVAFALAEMLKVNKVLKTLNVESNFISGAGILCLVEALPHNTS-LVELKI 287

Query: 570 VNQQQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQNRLV 749
            NQ Q  LG +VE EI  ++++NTTL   G        R+R  + + MN +   R+ RL 
Sbjct: 288 DNQSQP-LGNKVEMEIVNMLEKNTTLLKFGYHFTQQGPRLRASNAM-MNNNDLVRKRRLA 345

Query: 750 N 752
           +
Sbjct: 346 D 346

>sp|Q9NZR1|TMOD2_HUMAN Tropomodulin-2 (Neuronal tropomodulin) (N-Tmod)
          Length = 351

 Score =  129 bits (325), Expect = 1e-29
 Identities = 77/226 (34%), Positives = 124/226 (54%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYHASVENKEQMCGGFQGVAKYESCKPV 224
           D E +EAL +A++ EL DLAAVLG + +LN  ++     N +   G  + V K E  KPV
Sbjct: 116 DPELEEALASASDTELYDLAAVLGVHNLLNNPKFDEETANNKGGKGPVRNVVKGEKVKPV 175

Query: 225 PDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXXXXXXX 404
            +EP N T+VE  +++++AND SL+EVNLNN+KNI    ++   +               
Sbjct: 176 FEEPPNPTNVEISLQQMKANDPSLQEVNLNNIKNIPIPTLREFAKALETNTHVKKFSLAA 235

Query: 405 IGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRVVNQQQ 584
              ++     F  +L+ N  L +LN+ESN++ G  I+ L+ A+ +E   L E+++ NQ+Q
Sbjct: 236 TRSNDPVAIAFADMLKVNKTLTSLNIESNFITGTGILALVEAL-KENDTLTEIKIDNQRQ 294

Query: 585 KVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVD 722
           + LG  VE EI ++++EN+ +   G        R R+   +  N D
Sbjct: 295 Q-LGTAVEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNND 339

>sp|P28289|TMOD1_HUMAN Tropomodulin-1 (Erythrocyte tropomodulin) (E-Tmod)
          Length = 359

 Score =  129 bits (325), Expect = 1e-29
 Identities = 82/241 (34%), Positives = 133/241 (55%), Gaps = 5/241 (2%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYH-----ASVENKEQMCGGFQGVAKYE 209
           + E +EAL NA++ EL D+AA+LG + +++  QY+     +S+ NKE    G   V K  
Sbjct: 113 EPELEEALANASDAELCDIAAILGMHTLMSNQQYYQALSSSSIMNKE----GLNSVIKPT 168

Query: 210 SCKPVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXX 389
             KPVPDE  N TDVE  +++++ ND  L+EVNLNN++NI    +K   E          
Sbjct: 169 QYKPVPDEEPNSTDVEETLERIKNNDPKLEEVNLNNIRNIPIPTLKAYAEALKENSYVKK 228

Query: 390 XXXXXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRV 569
                   ++        +L++N  L+TLN+ESN+++G  I++L+ A+    S L+E+++
Sbjct: 229 FSIVGTRSNDPVAYALAEMLKENKVLKTLNVESNFISGAGILRLVEALPYNTS-LVEMKI 287

Query: 570 VNQQQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQNRLV 749
            NQ Q  LG +VE EI  ++++N TL   G        R+R  + + MN +   R+ RL 
Sbjct: 288 DNQSQP-LGNKVEMEIVSMLEKNATLLKFGYHFTQQGPRLRASNAM-MNNNDLVRKRRLA 345

Query: 750 N 752
           +
Sbjct: 346 D 346

>sp|Q9JHJ0|TMOD3_MOUSE Tropomodulin-3 (Ubiquitous tropomodulin) (U-Tmod)
          Length = 352

 Score =  122 bits (306), Expect = 2e-27
 Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 5/246 (2%)
 Frame = +3

Query: 36  MEFDTEFDEALKNATEEELVDLAAVLGFNGMLNQTQY-----HASVENKEQMCGGFQGVA 200
           +  D E +EAL +A++ EL DLAA+LG + ++  T +      ++  N+E+    F  V 
Sbjct: 113 ISLDPELEEALTSASDTELCDLAAILGMHNLIADTPFCDVLGSSNGVNQER----FPNVV 168

Query: 201 KYESCKPVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXX 380
           K E   PV DEP N T+VE  +K++  ND+ L EVNLNN+KNI    +K   +       
Sbjct: 169 KGEKILPVFDEPPNPTNVEESLKRIRENDARLVEVNLNNIKNIPIPTLKDFAKTLEANTH 228

Query: 381 XXXXXXXXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLE 560
                      ++     F  +L+ N  L++LN+ESN++ G  ++ LI A+ R+   L+E
Sbjct: 229 VKHFSLAATRSNDPVAVAFADMLKVNKTLKSLNMESNFITGAGVLALIDAL-RDNETLME 287

Query: 561 LRVVNQQQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQN 740
           L++ NQ+Q+ LG  VE E+ ++++ENT +   G        R R  + +  N D   R+ 
Sbjct: 288 LKIDNQRQQ-LGTSVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNND-LVRKR 345

Query: 741 RLVNKH 758
           R+   H
Sbjct: 346 RIEGDH 351

>sp|Q9NYL9|TMOD3_HUMAN Tropomodulin-3 (Ubiquitous tropomodulin) (U-Tmod)
          Length = 352

 Score =  121 bits (303), Expect = 4e-27
 Identities = 81/244 (33%), Positives = 127/244 (52%), Gaps = 3/244 (1%)
 Frame = +3

Query: 36  MEFDTEFDEALKNATEEELVDLAAVLGFNGMLNQTQY---HASVENKEQMCGGFQGVAKY 206
           +  D E +EAL +A++ EL DLAA+LG + ++  T++     S    +Q    F  V K 
Sbjct: 113 VSLDPELEEALTSASDTELCDLAAILGMHNLITNTKFCNIMGSSNGVDQE--HFSNVVKG 170

Query: 207 ESCKPVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXX 386
           E   PV DEP N T+VE  +K+ + ND+ L EVNLNN+KNI    +K   +         
Sbjct: 171 EKILPVFDEPPNPTNVEESLKRTKENDAHLVEVNLNNIKNIPIPTLKDFAKALETNTHVK 230

Query: 387 XXXXXXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELR 566
                    ++     F  +L+ N  L++LN+ESN++ G  I+ LI A+ R+   L EL+
Sbjct: 231 CFSLAATRSNDPVATAFAEMLKVNKTLKSLNVESNFITGVGILALIDAL-RDNETLAELK 289

Query: 567 VVNQQQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQNRL 746
           + NQ+Q+ LG  VE E+ ++++ENT +   G        R R  + +  N D   R+ R+
Sbjct: 290 IDNQRQQ-LGTAVELEMAKMLEENTNILKFGYQFTQQGPRTRAANAITKNND-LVRKRRV 347

Query: 747 VNKH 758
              H
Sbjct: 348 EGDH 351

>sp|Q9JLH8|TMOD4_MOUSE Tropomodulin-4 (Skeletal muscle tropomodulin) (Sk-Tmod)
          Length = 345

 Score =  118 bits (295), Expect = 3e-26
 Identities = 71/235 (30%), Positives = 129/235 (54%), Gaps = 2/235 (0%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYHASVENKEQMCG--GFQGVAKYESCK 218
           + E +EAL +AT+ E+ D+AA+LG   +++  QY+ ++ + E +C   G   V + +  K
Sbjct: 113 EPELEEALSHATDAEMCDIAAILGMYTLMSNKQYYDAICSGE-ICNTEGISSVVQPDKYK 171

Query: 219 PVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXXXXX 398
           PVPDEP N T++E ++K++ +ND  L+EVNLNN+++I   V+  LCE             
Sbjct: 172 PVPDEPPNPTNIEEMLKRVRSNDKELEEVNLNNIQDIPIPVLSDLCEAMKTNTYVRSFSL 231

Query: 399 XXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRVVNQ 578
                 +   +    +L +N  L++LN+ESN+++   ++ ++ A+ RE + L ELRV NQ
Sbjct: 232 VATKSGDPIANAVADMLRENRSLQSLNIESNFISSTGLMAVLKAV-RENATLTELRVDNQ 290

Query: 579 QQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQNR 743
           +Q   G  VE E+  ++++  ++   G        R R    +  N + + +Q +
Sbjct: 291 RQWP-GDAVEMEMATVLEQCPSIVRFGYHFTQQGPRARAAHAMTRNNELRRQQKK 344

>sp|Q9NZQ9|TMOD4_HUMAN Tropomodulin-4 (Skeletal muscle tropomodulin) (Sk-Tmod)
          Length = 345

 Score =  115 bits (287), Expect = 3e-25
 Identities = 69/235 (29%), Positives = 128/235 (54%), Gaps = 2/235 (0%)
 Frame = +3

Query: 45  DTEFDEALKNATEEELVDLAAVLGFNGMLNQTQYHASVENKEQMCG--GFQGVAKYESCK 218
           + E +EAL +AT+ E+ D+AA+L    +++  QY+ ++ + E +C   G   V + +  K
Sbjct: 113 EPELEEALAHATDAEMCDIAAILDMYTLMSNKQYYDALCSGE-ICNTEGISSVVQPDKYK 171

Query: 219 PVPDEPDNDTDVESVIKKLEANDSSLKEVNLNNLKNINEDVIKRLCEXXXXXXXXXXXXX 398
           PVPDEP N T++E ++K++ +ND  L+EVNLNN+++I   ++  LCE             
Sbjct: 172 PVPDEPPNPTNIEEILKRVRSNDKELEEVNLNNIQDIPIPMLSELCEAMKANTYVRSFSL 231

Query: 399 XXIGLSNSGCDHFVVLLEKNDHLETLNLESNYLNGDSIIKLITAINREKSGLLELRVVNQ 578
                 +   +    +L +N  L++LN+ESN+++   ++ ++ A+ RE + L ELRV NQ
Sbjct: 232 VATRSGDPIANAVADMLRENRSLQSLNIESNFISSTGLMAVLKAV-RENATLTELRVDNQ 290

Query: 579 QQKVLGVRVEQEINRLIKENTTLQVLGVDLETADARIRIRDHLAMNVDKKTRQNR 743
           +Q   G  VE E+  ++++  ++   G        R R    +  N + + +Q +
Sbjct: 291 RQWP-GDAVEMEMATVLEQCPSIVRFGYHFTQQGPRARAAQAMTRNNELRRQQKK 344

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,063,371
Number of Sequences: 369166
Number of extensions: 1613028
Number of successful extensions: 4875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4848
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10526866900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00886

  1. Dr_sW_022_F10
  2. Dr_sW_024_L12
  3. Dr_sW_022_O12
  4. Dr_sW_003_C12